Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq8653 163 2e-35 seq3381 131 1e-25 seq1351 122 8e-23 seq4240 107 2e-18 seq13839 84.2 2e-11 >seq8653 Length=1535 Score = 163 bits (180), Expect = 2e-35 Identities = 178/234 (76%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || ||||||||| ||||||||||| ||||| || || |||||||| | || || ||| Sbjct 424 AATAATGCAAATCTTTGTAAAGACATTGACTGGAAAGACCATCACACTAGAGGTCGAGGG 365 Query 25055 GTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||||||||||||||| | ||| |||| | ||| ||||||||||| || ||||| | Sbjct 364 CTCTGACACTATCGAGAACGTCAAGGCAAAGATTCAA-GACAAAGAAGGTATCCCACCCG 306 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | ||||| || | || ||||||||||| ||| | ||||| | ||||||| | ||||| | Sbjct 305 ATCAACAACGTTTGATCTTTGCCGGCAAGCAACTTGAAGACGGTCGCACTCTCGGCGACT 246 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||| ||||| || || || || || || || ||||| | || | ||||||| Sbjct 245 ACAACATTCAGAAGGAGTCTACCCTCCACTTGGTGCTGCGTCTCCGTGGAGGAA 192 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| |||||| | || || || | ||||| |||| || ||| || Sbjct 193 AATGCAGATCTTTGTGAAGACTCTCACTGGCAAGACTATCACCCTCGAGGTTGAGGGCTC 134 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||||| | ||| || ||| || || || || || ||||| || || Sbjct 133 TGACACTATCGAGAACGTCAAGGCCAAGATCCAAGATAAGGAGGGAATCCCACCCGATCA 74 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||||||||| || | || |||| ||| || | || || ||||| Sbjct 73 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGTCGTACCCTCGGTGACTACAA 14 Query 25178 TATTCAAAAAGA 25189 ||||| || || Sbjct 13 CATTCAGAAGGA 2 >seq3381 Length=12314 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||||||||||| || | ||||| |||| || ||| || Sbjct 1187 ATGCAAATCTTTGTGAAGACTTTGACCGGAAAGACTATCACCCTCGAGGTTGAGGGTTCG 1246 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||||||| | ||| || ||| || || || || || ||||| || || Sbjct 1247 GATACTATCGAGAACGTCAAGGCCAAGATCCAAGATAAGGAGGGTATCCCACCCGATCAG 1306 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||||||||| ||| | || |||| ||| ||| | ||||| ||||| Sbjct 1307 CAACGTCTCATCTTTGCCGGCAAGCAACTCGAGGATGGTCGTACTCTTGGCGACTACAAC 1366 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||| ||||| || || || || || || || || | ||||| Sbjct 1367 ATTCAAAAGGAATCTACTCTCCACTTGGTTCTCAGACTCCGTGGAGG 1413 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||||||||| || || |||||||| | || || ||| || Sbjct 731 ATGCAAATCTTTGTTAAGACTTTGACTGGCAAGACCATCACACTGGAGGTTGAGGGCTCC 790 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || | ||| || ||| || || || || || ||||| || || Sbjct 791 GACACTATTGAAAATGTTAAGGCTAAGATCCAAGATAAGGAGGGTATCCCACCCGATCAG 850 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| ||||| || | || |||| |||||| | || || ||||| Sbjct 851 CAGCGTCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGTCGCACCCTCGGTGACTACAAC 910 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| ||||| || ||| | || || || || ||||||| Sbjct 911 ATCCAGAAAGAGTCCACTCTTCATCTCGTCCTCAGACTGCGAGGAGG 957 >seq1351 Length=12664 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||| | || || || ||||||| | || || ||| || Sbjct 4704 ATGCAAATCTTTGTGAAGACTCTAACTGGAAAGACCATCACTCTGGAGGTCGAGGGATCC 4763 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || |||||||| ||||| Sbjct 4764 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCACCCGACCAG 4823 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || |||| ||||| | || || ||||| Sbjct 4824 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGACGCACCCTCGGTGACTACAAC 4883 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| || ||||| || || || ||||| Sbjct 4884 ATTCAAAAGGAGTCCACCCTTCACTTGGTGCT 4915 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || |||||||| | || || ||| ||| Sbjct 4932 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACACTTGAGGTTGAGGGCTCT 4991 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| | ||| | || | ||| ||||| || || || ||||| ||||| Sbjct 4992 GACACCATCGAGAACGTCAAGGCCAAGATTCAA-GACAAGGAGGGAATCCCACCCGACCA 5050 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||||||||| || | || |||| ||||||| | ||||| || || Sbjct 5051 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGTCGCACTCTTGGCGACTATAA 5110 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||| || ||||| || || || || | || || | ||||| Sbjct 5111 CATTCAAAAGGAGTCCACCCTTCACTTGGTATTGAGACTTCGTGGAGG 5158 Score = 105 bits (116), Expect = 6e-18 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| |||| || ||| || Sbjct 4476 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGGGATCC 4535 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || || ||||| ||||| Sbjct 4536 GACACCATCGAGAACGTCAAGNNCAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAG 4595 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||||||||| ||| | || |||| ||||| | || || ||||| Sbjct 4596 CAACGTTTGATCTTTGCCGGCAAGCAACTTGAGGATGGACGCACCCTCGGTGACTACAAC 4655 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| || ||||| || || || || || Sbjct 4656 ATTCAAAAGGAGTCCACCCTTCACTTGGTTCT 4687 >seq4240 Length=2116 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || ||||||| | || || || ||| Sbjct 1443 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATCACCCTTGAGGTCGAAGGCTCT 1502 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || || ||||| ||||| Sbjct 1503 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCCGACCAG 1562 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || |||||||| || || | || || | ||||||| | || |||||| Sbjct 1563 CAGCGTCTCATCTTTGCCGGAAAGCAGCTCGAGGACGGTCGCACTCTCTCTGACTACAAT 1622 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || ||||| || || || ||||| Sbjct 1623 ATTCAGAAGGAGTCCACCCTTCACTTGGTGCT 1654 >seq13839 Length=228 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| || || || ||||| ||||| ||||| | || ||||||||||| || | || Sbjct 23 GACAAGGAGGGAATCCCACCCGACCAGCAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAG 82 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| ||||| | || || ||||| |||||||| || ||||| || || || ||||| Sbjct 83 GATGGACGCACCCTCGGTGACTACAACATTCAAAAGGAGTCCACCCTTCACTTGGTGCT 141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433178927991005