Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq501 93.3 5e-14 seq1 89.7 6e-13 >seq501 Length=12468 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 162269 TAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAATCCTGT 162327 |||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||| Sbjct 11103 TAGCTCAGCTGGATAGAGCAACGGCCTTCTAAGCCGTAGGTCACAGGTTCGAATCCTGT 11045 >seq1 Length=380338 Score = 89.7 bits (98), Expect = 6e-13 Identities = 176/255 (69%), Gaps = 4/255 (2%) Strand=Plus/Minus Query 107552 CGAGAAACAAGTATATCGCATTGACCATTATCTCGGTAAAGATACTGTCAATAACATTCT 107611 ||| |||||| | || | ||||||||||| || || ||||| || ||| | |||||| | Sbjct 3199 CGAAAAACAAATTTACAGGATTGACCATTACCTGGGCAAAGAAACCGTCCAGAACATTAT 3140 Query 107612 TGCTACTCGCTTCAGCAACAT-TCTTCTTGAACCACTTTGGAACAGGCAGTATGTAGAAG 107670 || || || |||| | ||| || ||||| || ||||||||| ||| | || Sbjct 3139 GGC-CTTCCGTTTTGCAAATTCTCTACTGGAACCGCTCTGGAACAGGACTTATATTGACC 3081 Query 107671 AAGTGCAGATCTTTGCGTCCGAGACTATTGGTTG-TGAGGGTCGTGCCCAGTATTATGAG 107729 | || ||||| | | | |||| || ||| || || || |||| ||||| || Sbjct 3080 ACGTTCAGATATCGGTGACCGA-ACAGCTGGGTGTTGGGGACCGTGGTGGCTATTACGAA 3022 Query 107730 ACCGCTGGTGCTGTCAGGGATATGCTGCAGAATCACATTCTGCAAGTGTTGGCATTGATA 107789 | ||| |||||| | ||||| ||| | ||||| |||||| ||||| || | |||| Sbjct 3021 AGCGCCGGTGCTTTAAGGGACATGATCCAGAACCACATTTTGCAATTGCTATGTCTGATT 2962 Query 107790 GCAATGGAAGCACCT 107804 | ||||||| | ||| Sbjct 2961 GGAATGGAAACCCCT 2947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567031859279200