Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1043 181 1e-40 seq19 176 5e-39 seq3533 134 2e-26 >seq1043 Length=1979 Score = 181 bits (200), Expect = 1e-40 Identities = 390/573 (68%), Gaps = 14/573 (2%) Strand=Plus/Plus Query 93083 TACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTG 93142 |||| || || ||||||||| || ||||| ||||| || |||| ||| || | Sbjct 207 TACAGCAAACAGGCAAAGTCGCAGTGCAAACCCTCGTCACGACTGATCAGCTCGTTCGAG 266 Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACC 93201 || | || || | | | || || |||||||||||||| || || ||| ||||| || Sbjct 267 AACGACAAGCCGTGCATTAAACCGCGCTTCTTGAGCCAAAAGATCGA-GCAGAAACTGCC 325 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261 | ||| || ||||| || || || ||||| || || | ||| ||||| || || | Sbjct 326 ACTAAAGAAGATACCCTCGACAGCGGCAAAGGCGACCAAACGCTCGGCGAA---TGAGCG 382 Query 93262 ATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTC 93321 | || ||||||| || ||||| |||||||| ||||||| || | || || Sbjct 383 AGCGTTGGTGATCCAGCGCAAGGCCCAGTCGGCTTTCTTCTTAACGGCGGGGATAGTCTC 442 Query 93322 GATAGCGTTAAATAGGTAATCTCGCTCGTC-CGAATCTCGT-ATGTATGTATCGATTAAC 93379 ||| |||| || || || | || || || || | ||||| || ||||| | Sbjct 443 GATGGCGTGGAAGAGC--ATGTTCTTCTTCTCGGTGTTCTTGATGTAGGTGTCGATGAGA 500 Query 93380 AGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA 93439 ||| || | ||||| |||| ||||| || || ||||||||||| |||||||| | Sbjct 501 AGACTGTAGGTCTCAGAGTGGATGTTCTCGATGGCGATTTGGAATCCATAGAAACAACGT 560 Query 93440 GCTTCCGTGATCTGCACTTCTTGAGA-AAATCTCTCTACGAGATTTTCATTGACTATACC 93498 || || | ||||||||| || || | || | | ||||| || ||||| || || Sbjct 561 GCCTCTGGGATCTGCACCTC-AGACATGAAGCGTGTGGCAAGATTCTCGTTGACAATGCC 619 Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG 93558 || ||||| ||||| || |||| || || | ||||| || ||| | ||| || || Sbjct 620 GTCCGATGCGGCAAAGAAGGCCAGTACGTGAGTGATAAAGTGACGCTCGTTATCGTTCAG 679 Query 93559 C---TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGA 93615 | || ||||||||| | || ||| ||||||| |||||| | ||||| || || Sbjct 680 CTTGTTCTCCCAATCGTGAATGTCGCTTGCCAGATCGATCTCTTCGGCTGTCCAGAAAGA 739 Query 93616 TGCTTCTGCTTTTTTGTACATATCCCATATGTC 93648 ||| ||||| || |||||||| | ||| ||||| Sbjct 740 TGCCTCTGCCTTCTTGTACATGTTCCAAATGTC 772 >seq19 Length=770976 Score = 176 bits (194), Expect = 5e-39 Identities = 396/590 (67%), Gaps = 10/590 (2%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||| || ||| | || || |||| || ||||||||||| || || |||| Sbjct 360561 GCAGGCAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAG 360502 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 ||||| | ||| |||| ||| || | ||| || || ||| || || || || || Sbjct 360501 CCCTGGCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAACAGAAGCTCCCGCTGAAGAA 360442 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 || |||||||| || || || ||||| | |||||||||||||||| || | | Sbjct 360441 AATGCCTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAATTTCCGCCCTCA----- 360387 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTT 93330 ||||| || ||||| || ||||||||||| | |||||| | || || | || | Sbjct 360386 -ATCCAGCGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATG 360328 Query 93331 AAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACAT 93390 || || ||| || || | |||| || || |||||||| | ||| | ||| | Sbjct 360327 GAACAGCCTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGT 360268 Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450 |||||| |||| || ||||| || ||||| || || ||||| | ||||| | | Sbjct 360267 TTCAGAGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAG 360208 Query 93451 CTGCACTTC-TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTG 93509 ||| ||||| | | || | || || | || |||||||| || || || || ||| | Sbjct 360207 CTGTACTTCGCTCATGAAGT-TCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAG 360149 Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATC-ATCTTTAAGCTTATCCCAA 93568 |||||||||| | |||||| || ||||| ||| | | |||||| || ||||| Sbjct 360148 CAAAAAAAGCAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAG-TTGTCCCAG 360090 Query 93569 TCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTT 93628 | | || | ||||| || | |||||| | ||||| || |||||| || Sbjct 360089 TGCTTCTGGTCATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTC 360030 Query 93629 TTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACG 93678 || ||||| ||||| || || | |||| ||| || || | ||||| || Sbjct 360029 TTATACATTTCCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAAGCG 359980 >seq3533 Length=1137 Score = 134 bits (148), Expect = 2e-26 Identities = 503/781 (64%), Gaps = 22/781 (3%) Strand=Plus/Minus Query 92936 AATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACAGGTAGAGCG 92995 ||||| ||||||||||||||| ||| | ||||||||| | ||| || || || | Sbjct 1110 AATTCAATGTACTGAGACATCGAATTGCTATTCATTCCAATTAGATCAACTGGCAGCGAA 1051 Query 92996 TCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTATTACTCTACTA 93055 || || | || ||||||||| || || || | ||| |||||| || Sbjct 1050 TCTGTGATAAACTCTTTCTCGCAAGAGACAGCGTCGCGGATGATAG-----ACTCTA-TA 997 Query 93056 TTTGGTGGTTTT------TGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGT 93109 ||| ||| | | || || | | || |||| | ||| ||||||||| ||| Sbjct 996 GTTGCTGGCTCTAGACGGTGCACCAGCTTTTTATACAGCATGCAAGCAAAGTCGCAGTGT 937 Query 93110 AAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGT 93169 | ||| ||||| || |||| ||| ||| || || | ||||| | | || | | Sbjct 936 AGACCCTCGTCACGACTGATCAGCTCGTTGGAAAAGGTAAGGCCTGGCATTAAACCCCTT 877 Query 93170 TTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCA 93229 ||||| | ||| | || | | ||| || || || || ||||| || || || ||| Sbjct 876 TTCTTCAACCAGTAGATGGCACAAAAGCTGCCGCTGAAGAAGATACCCTCAACCGCAGCA 817 Query 93230 AATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAA 93289 |||||||| | ||||||||| || || || || ||||||| | ||||| Sbjct 816 AATGCCACCAAACGTTCGGCGAA---TGAACAAGAGTTGGTGATCCAGCGCAGCGCCCAC 760 Query 93290 TCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTC- 93348 || || || ||||| | || | || || || ||||| || || | | | || Sbjct 759 TCTGCCTTCTTCTTTACGGCGGGGATCGTCTCTATCGCGTTGAAAAGCTCCTGTTTCTTT 700 Query 93349 GTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTC 93408 || | | | | | |||||| ||||| || ||| || | || | || | ||||| Sbjct 699 GTGCTACTTTTA-ACGTATGTGTCGATCAAAAGACTGTAGGTCTCTGCGTGAATGTTCTC 641 Query 93409 CATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAA-A 93467 || || || || || || ||||| || | || || | || || || || || | | Sbjct 640 AATCGCGATCTGAAAGCCATAGAAGCAGCGGGCCTCTGGTATTTGTACCTCA-GACATGA 582 Query 93468 ATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATAT 93527 ||| ||||||| |||||||| ||||| || ||||| ||||| || |||| | || Sbjct 581 ATCGAGTGGCGAGATTCTCATTGACGATACCGTCTGATGCGGCAAAGAATGCCAGCACAT 522 Query 93528 GCTTTATAAAATGTTTCTCATCATCTTTAAGCTTAT---CCCAATCGGATAGATCTTTTG 93584 | ||||| ||| || | || || ||||| | |||||||| | ||| | Sbjct 521 TGGTGATAAAGTGTCGTTCGTTGTCATTGAGCTTGTTCTCCCAATCGTTCATATCAGAAG 462 Query 93585 AAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATA 93644 | || | ||| || | ||||| || || ||||||||||| |||||||||||||||| Sbjct 461 CCAAGTCTAATTCCTCTGCTGTCCAGAATGAAGCTTCTGCTTTCTTGTACATATCCCATA 402 Query 93645 TGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCT 93704 ||||| || || || || || | || || | || ||| ||| ||||||| || | Sbjct 401 TGTCTGTATGTTTGATAGGGAAGAGAACGAATCTATCTTTGTTTTCTCTTAGTAAAGGTT 342 Query 93705 C 93705 | Sbjct 341 C 341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556664318627480