Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1351 145 6e-30 seq3382 136 3e-27 seq3381 136 3e-27 seq4240 118 9e-22 seq13839 116 3e-21 seq8653 116 3e-21 >seq1351 Length=12664 Score = 145 bits (160), Expect = 6e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||| |||| || || || ||||||| || || || || Sbjct 4704 ATGCAAATCTTTGTGAAGACTCTAACTGGAAAGACCATCACTCTGGAGGTCGAGGGATCC 4763 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || |||||||||||||||||||||||||| || Sbjct 4764 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCACCCGACCAG 4823 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| | |||||| |||||| || || |||||| Sbjct 4824 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGACGCACCCTCGGTGACTACAAC 4883 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || |||||| | || || || | || | || |||||| Sbjct 4884 ATTCAAAAGGAGTCCACCCTTCACTTGGTGCTCCGTCTCCGTGGAGGT 4931 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| ||||| || || | | Sbjct 4932 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACACTTGAGGTTGAGGGCTCT 4991 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || ||||||||||||||||| || |||||||| || Sbjct 4992 GACACCATCGAGAACGTCAAGGCCAAGATTCAAGACAAGGAGGGAATCCCACCCGACCAG 5051 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| | |||||| ||||| | ||| || ||| Sbjct 5052 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGTCGCACTCTTGGCGACTATAAC 5111 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || |||||| | || || || ||| || | || |||||| Sbjct 5112 ATTCAAAAGGAGTCCACCCTTCACTTGGTATTGAGACTTCGTGGAGGT 5159 Score = 116 bits (128), Expect = 3e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || || || || Sbjct 4476 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGGGATCC 4535 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || |||||||||||||| |||||||| || Sbjct 4536 GACACCATCGAGAACGTCAAGNNCAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAG 4595 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||||||||| || | |||||| |||||| || || |||||| Sbjct 4596 CAACGTTTGATCTTTGCCGGCAAGCAACTTGAGGATGGACGCACCCTCGGTGACTACAAC 4655 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || |||||| | || || ||| | || | || |||||| Sbjct 4656 ATTCAAAAGGAGTCCACCCTTCACTTGGTTCTTCGTCTCCGTGGAGGT 4703 >seq3382 Length=4522 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || ||| | ||||| || || |||| ||||| || || || Sbjct 3953 ATGCAAATTTTCGTCAAGACTCTGACCGGAAAGACCATCACCCTTGAGGTTGAGGGTTCC 4012 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| || || |||||||||||||| || |||||||| || Sbjct 4013 GATACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCCGACCAG 4072 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || |||||||| || ||||| ||||| || ||| |||| || |||||| Sbjct 4073 CAGCGTCTCATCTTTGCCGGAAAGCAGTTGGAGGACGGTCGTACCCTCTCTGACTACAAC 4132 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || |||||| | || || || | || | || |||||| Sbjct 4133 ATCCAAAAGGAGTCCACCCTTCACTTGGTGCTCCGTCTCCGTGGAGGT 4180 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || || || || Sbjct 4181 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGGGATCC 4240 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || ||||||||||| ||||||||||| || Sbjct 4241 GACACCATTGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCACCCGACCAG 4300 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || |||||||| || ||||| |||||| || ||| |||| || ||||| Sbjct 4301 CAACGTCTCATCTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACCCTCTCTGACTACAAT 4360 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | ||||| || | || | || |||||| Sbjct 4361 ATCCAGAAGGAGTCAACTCTCCATTTGGTCCTCCGTCTCCGTGGAGGT 4408 >seq3381 Length=12314 Score = 136 bits (150), Expect = 3e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 |||| |||||||| |||||||| ||||| || || || || |||| || || || || Sbjct 726 TAAACATGCAAATCTTTGTTAAGACTTTGACTGGCAAGACCATCACACTGGAGGTTGAGG 785 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 | |||| || | || || | || || || ||||| ||||||||||| ||||||| Sbjct 786 GCTCCGACACTATTGAAAATGTTAAGGCTAAGATCCAAGATAAGGAGGGTATCCCACCCG 845 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393 |||| || ||||| || ||||| ||||| ||| | |||||| |||||| || || | Sbjct 846 ATCAGCAGCGTCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGTCGCACCCTCGGTGACT 905 Query 22394 ACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||| || ||||| ||||| | ||| | || | || |||| |||||| Sbjct 906 ACAACATCCAGAAAGAGTCCACTCTTCATCTCGTCCTCAGACTGCGAGGAGGT 958 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||||| ||||| || || |||| || || || || | Sbjct 1187 ATGCAAATCTTTGTGAAGACTTTGACCGGAAAGACTATCACCCTCGAGGTTGAGGGTTCG 1246 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | |||| || || ||||| ||||||||||| ||||||||||| Sbjct 1247 GATACTATCGAGAACGTCAAGGCCAAGATCCAAGATAAGGAGGGTATCCCACCCGATCAG 1306 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||||||||| || | |||||| || || | ||| |||||| Sbjct 1307 CAACGTCTCATCTTTGCCGGCAAGCAACTCGAGGATGGTCGTACTCTTGGCGACTACAAC 1366 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| ||||| || | || || ||| | || | || |||||| Sbjct 1367 ATTCAAAAGGAATCTACTCTCCACTTGGTTCTCAGACTCCGTGGAGGT 1414 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || || || ||| |||||||||| || || | | Sbjct 959 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACGATCACTCTTGAGGTTGAGGGCTCG 1018 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || |||||||||||||| |||||||||||||| || Sbjct 1019 GACACCATTGAGAATGTCAAGGCTAAGATTCAAGACAAGGAAGGTATTCCACCCGACCAG 1078 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| || || || || || ||| || ||| || || |||||| Sbjct 1079 CAGCGTCTCATTTTTGCTGGAAAGCAATTGGAAGATGGTCGTACCCTCGGTGACTACAAC 1138 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || ||||| |||||| | || || || Sbjct 1139 ATCCAGAAAGAGTCCACCCTTCACTTGGT 1167 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || ||||| || ||||||| || || ||| | | Sbjct 1415 ATGCAGATCTTCGTCAAGACTCTTACTGGTAAGACTATCACTCTCGAGGTTGAAGGCTCT 1474 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || ||| || ||||| ||||||||||| |||||||| || Sbjct 1475 GATACCATTGAGAACGTAAAGGCAAAGATCCAAGATAAGGAGGGTATCCCACCCGACCAG 1534 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| ||||| ||| | |||||| |||||| | ||| |||||| Sbjct 1535 CAGCGTTTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTTGGCGACTACAAC 1594 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447 || ||||| ||||| || | || || ||| | || | || ||||||| Sbjct 1595 ATCCAAAAGGAATCTACTCTCCACTTGGTTCTCAGACTCCGTGGAGGTT 1643 >seq4240 Length=2116 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || ||||| | || ||||| || | || ||||| || || | | Sbjct 1215 ATGCAGATTTTCGTAAAAACACTCACTGGTAAGACTATTACCCTTGAGGTCGAGGGCTCG 1274 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || ||||||||||| ||||||||||| || Sbjct 1275 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCACCCGACCAG 1334 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || |||||||| || ||||| |||||| || ||| |||| || ||||| Sbjct 1335 CAACGTCTCATCTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACCCTCTCTGACTACAAT 1394 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | ||||| || | || | || |||||| Sbjct 1395 ATCCAGAAGGAGTCAACTCTCCATTTGGTCCTCCGTCTCCGTGGAGGT 1442 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||| || || || || |||| ||||| || ||| | | Sbjct 1443 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATCACCCTTGAGGTCGAAGGCTCT 1502 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || ||||||||||| || |||||||| || Sbjct 1503 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCCGACCAG 1562 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || |||||||| || ||| | ||||| ||||| |||| || ||||| Sbjct 1563 CAGCGTCTCATCTTTGCCGGAAAGCAGCTCGAGGACGGTCGCACTCTCTCTGACTACAAT 1622 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || |||||| | || || || | || | || |||||| Sbjct 1623 ATTCAGAAGGAGTCCACCCTTCACTTGGTGCTCCGTCTCCGTGGAGGT 1670 >seq13839 Length=228 Score = 116 bits (128), Expect = 3e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||||||||||||||| || |||||||| || || ||||| || ||||||||||| Sbjct 14 AAGATTCAAGACAAGGAGGGAATCCCACCCGACCAGCAGCGTCTCATCTTTGCCGGCAAG 73 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| |||||| || || |||||||||||||| || |||||| | || Sbjct 74 CAGCTTGAGGATGGACGCACCCTCGGTGACTACAACATTCAAAAGGAGTCCACCCTTCAC 133 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || || | || | || |||||| Sbjct 134 TTGGTGCTCCGTCTCCGTGGAGGT 157 >seq8653 Length=1535 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || || || || || |||| || || || || | | Sbjct 420 ATGCAAATCTTTGTAAAGACATTGACTGGAAAGACCATCACACTAGAGGTCGAGGGCTCT 361 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| ||| ||||||||||| || ||||| |||||||||||| Sbjct 360 GACACTATCGAGAACGTCAAGGCAAAGATTCAAGACAAAGAAGGTATCCCACCCGATCAA 301 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||||||||| || | || || ||||| || ||| |||||| Sbjct 300 CAACGTTTGATCTTTGCCGGCAAGCAACTTGAAGACGGTCGCACTCTCGGCGACTACAAC 241 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || ||| | || || || |||| | || ||||| Sbjct 240 ATTCAGAAGGAGTCTACCCTCCACTTGGTGCTGCGTCTCCGTGGAGG 194 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || || || || |||| || || || || | | Sbjct 192 ATGCAGATCTTTGTGAAGACTCTCACTGGCAAGACTATCACCCTCGAGGTTGAGGGCTCT 133 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || || ||||| |||||||| || ||||||||||| Sbjct 132 GACACTATCGAGAACGTCAAGGCCAAGATCCAAGATAAGGAGGGAATCCCACCCGATCAG 73 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| | |||||| || ||| || || |||||| Sbjct 72 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGTCGTACCCTCGGTGACTACAAC 13 Query 22399 ATTCAAAAAGA 22409 ||||| || || Sbjct 12 ATTCAGAAGGA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419583606616255