Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq13335 116 8e-21 seq689 93.3 9e-14 seq4789 89.7 1e-12 seq3143 89.7 1e-12 >seq13335 Length=4250 Score = 116 bits (128), Expect = 8e-21 Identities = 364/555 (66%), Gaps = 13/555 (2%) Strand=Plus/Plus Query 293106 GTTCATGCTCTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGT 293165 ||| | |||||| | || |||| || |||||||| || || || | || |||| ||| Sbjct 1210 GTTGAAGCTCTGACTTTGGTCGATGAAAGCACCACGGTCGGCCGCCATATCGATCAGTGT 1269 Query 293166 CTTCATAGAGATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAAT 293225 | | |||||||||| |||||||||| | || | || | ||| | Sbjct 1270 GCGCTGACGGATCTCCCACACGGTCTTGTACAGCTCTTTCAGGTCTTCGGGGATGGAATC 1329 Query 293226 AACCTTCTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGA---CCA 293282 | | |||||| || || | ||||||||| |||| ||||||||| ||||| ||| Sbjct 1330 GATCGCCTGGATCGAACCACGGTTGGCAATGATCTCGTTCTTCAT---CTCGGGTGTCCA 1386 Query 293283 -AGTCCCACGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAG 293341 || || | | || || | || | | || | |||||| |||| ||||||||| | Sbjct 1387 CAGACCGA-GTGCCATCAAGTCCTGCAGCAGCTGCTTGTTGACGACGGTGAACTCACCGG 1445 Query 293342 CGAGAGTGCGACGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGC 293401 | || ||||| ||||||||||| ||| || ||| || || ||| Sbjct 1446 CAAGCACACGACGACTGTAAATGTTGCTGGTGTATGGCTCGAAAGCTTCGTTGTTGCCGA 1505 Query 293402 AAATCTGAGCAGTAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACCCT 293461 || || | || |||||||| ||||| ||||| || || | ||| | || ||| Sbjct 1506 GGATTTGGGAGGTCGATGCGGTGGGCATTGGAGCAATCAACAAACTGTTGCGCAGACCAG 1565 Query 293462 TCTTGAC-ACGCGATTCG--AGACCCGCCCAGTCC-AGAGCAGTCTGAGGTGTAACACCC 293517 ||| ||| | ||| ||| || || | ||||||| || | | | | |||| ||||| Sbjct 1566 TCTCGACGATGCGCTTCTTCAGTCCGGTCCAGTCCCAGCGGGGGGTTGGTTGTA-CACCC 1624 Query 293518 CAGAGATGATACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGG 293577 || | || ||||| | | |||||||||||||||| || || |||| | || | | | Sbjct 1625 CAAAAATCGTACTGGAGGGTACCCTTGCTGGCAGGGGAGCCGGCAAACGATGGGTACGAG 1684 Query 293578 CCATGCTCATCAGAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAG 293637 || | |||| | | | |||| || || || |||||||||||| ||| ||| Sbjct 1685 CCCTCCTCAACGGCAACCTCGTTCGAGGCGGTAAGAGCAGCAAAGTATATGGTTTCGGCT 1744 Query 293638 ATCTCACGGTTGAGC 293652 ||||| ||||||||| Sbjct 1745 ATCTCGCGGTTGAGC 1759 >seq689 Length=4150 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || ||||| |||||||||||||||||||||| || || |||| || ||||||| |||||| Sbjct 4051 GACAGCCCTGTTAGCTCAGTCGGTAGAGCGCGAGGCTTTTAACCTCGTGGTCGGGGGTTC 3992 Query 142560 GAGCCCCACATCGGGC 142575 ||||||| ||| |||| Sbjct 3991 GAGCCCCCCATAGGGC 3976 >seq4789 Length=4571 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||||||||||||||| | ||||||| | |||||||||||||||||| Sbjct 2612 GCCCGTTTAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGAGC 2671 Query 142564 CCCACATCGGGC 142575 |||||| |||| Sbjct 2672 CCCACAGTGGGC 2683 >seq3143 Length=4653 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||||||||||||||| | ||||||| | |||||||||||||||||| Sbjct 2814 GCCCGTTTAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGAGC 2755 Query 142564 CCCACATCGGGC 142575 |||||| |||| Sbjct 2754 CCCACAGTGGGC 2743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027465074148907