Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_008717.1 Length=36415 Score E Sequences producing significant alignments: (Bits) Value seq3931 253 5e-63 seq8746 129 1e-25 seq8907 87.8 4e-13 seq1016 84.2 5e-12 >seq3931 Length=1953 Score = 253 bits (280), Expect = 5e-63 Identities = 558/819 (68%), Gaps = 33/819 (4%) Strand=Plus/Plus Query 988 GCTATGTTTATGCCCTAAGTCACGTTAGACACCCCTaaaaaaaaCCACCCTGCCAGGTGG 1047 ||||||||||||||||| || |||||||||| ||| ||||||||||||| | ||||| Sbjct 874 GCTATGTTTATGCCCTAGGTAACGTTAGACATCCC---AAAAAACCACCCTTGCCGGTGG 930 Query 1048 TGAG--ATGGAACGTAGGCATGAACAGAACCCGAAATCCCCCGCGACAACAACGTCCCGC 1105 | | ||||| |||||||||||| |||| |||||||| | ||| |||| || Sbjct 931 TTATGAATGGACGCTAGGCATGAACAAAACC-GAAATCCCGCTTGACC-CAACCCTGCGA 988 Query 1106 TGGGAGTGGATCAAATACCCAGCTCCGCGCCAGGGGGTCGTCCCTGGCCGAGGTGGCCCG 1165 ||||| ||||||||||||| | || || || | || |||| || || |||| || Sbjct 989 TGGGAATGGATCAAATACCAA-CTTCGTACCCGAGGTACGTCACTCGCAATCTTGGCGCG 1047 Query 1166 CTCCCTCGACGTATCCAGCC-CGGCAGTCAAAAACGCCAAGCTGAATCCCTACCCCTCGG 1224 || ||||| | ||| | || ||||| ||||| |||| | | || || || Sbjct 1048 TGAACTTGACGT-TACAGATGCTGCCGTCAAGAACGCTAAGCGCACCGCATATCCG-CGA 1105 Query 1225 GTAGAGCGCGCCATCGCTGCTGTACTCGACCTCAGCCCCCTAGTGCTGTGGCCTGAGCGC 1284 | ||||| || || || || || | ||||| || | | ||||||| || || Sbjct 1106 ATGGAGCGAGCTATTGCCCGTGCGCTAGGCCTCAAGCCAATCGACTTGTGGCCCGAACGT 1165 Query 1285 TGGCTCGACGACGAGAATCCGAAGCGGCAACGGCCCAATCGCTCGGAGACCTTGCAGG-C 1343 ||| || ||| | | || | || || | ||| | || | |||| | Sbjct 1166 TGGAACGCAAACG-GCACCCCA-----CACCGT---ATTCGGGTGCAGCGC--GCAGAAC 1214 Query 1344 ATATGTCAGACATAT-GCCAAGTGCTGAGGAAAATACCAGATACGCTGACCAAGCGCAGC 1402 | | || || | | |||||| || | | |||| | || || || | Sbjct 1215 ACAACGCA-ACTTCTAGCCAAGAGC------ATAACCCAGCTTA--TGCCCTTCGACACC 1265 Query 1403 GTAAAGCCGACGCGGGGGCTTGAACATGGCCCGCCGCAAAGACGACCGCACCCTGGACAT 1462 ||||| ||| | ||| || | |||||| ||| || || || || || | ||||| Sbjct 1266 GTAAAACCGGCACGGAGGTATAAACATGCGCCGTGTAAAGGATGATCGTACGTTAGACAT 1325 Query 1463 CTTCGATGTTCCGCAGCCAGCCCGCGCTATACCCGGCGAGTGCAACTATGCCGCCCAGGT 1522 |||| ||| || ||||||| | ||||| || || | ||||| ||||||| ||||| Sbjct 1326 CTTCTCTGTCCCACAGCCAGTTCTGGCTATCCCAGGGAATGGCAACAATGCCGCACAGGT 1385 Query 1523 CAGCGAGCTGGTCAGCGAAATTCTGAAGGCCGCCAACCTCGACCGTTACGAGGTCGCCGC 1582 ||| || ||| ||||||| |||||||| | || | || ||||||||||| | | || Sbjct 1386 CAGTGAACTGATCAGCGAGATTCTGAAAGGTTCCGATCTGGACCGTTACGAAATTGGTGC 1445 Query 1583 CCGCATGTCGCGCCTATCTGGCGATGACGTGAGCAAGAACATGCTCGACGCCTGGTCGAG 1642 |||||||| ||| | ||||||||||||||||| ||| ||||||| ||||| |||||||| Sbjct 1446 ACGCATGTCTCGCTTGTCTGGCGATGACGTGAGTAAGCACATGCTTGACGCGTGGTCGAG 1505 Query 1643 TCCCGCCCGAGCTGATCACAACTTGCCTTTCTACCGCGCCGCCCTCCTGGAGGACGTCTG 1702 || |||||| | || || ||| |||| ||||| | ||| | || || || || || || Sbjct 1506 CCCAGCCCGAACAGACCATAACCTGCCGTTCTATAGAGCCCCACTGCTTGAAGAAGTTTG 1565 Query 1703 CGCGAGCCACCTGCTGACCAACTGGCTGGTCGATGTGCGGGGCGGCCGCGTGGCCTATGG 1762 || ||| | | ||| |||||||||| || || || ||||||||||| || || Sbjct 1566 TAGCAGTCACGTTTTAACCGACTGGCTGGTTGAGCAACGTGGTGGCCGCGTGGCTTACGG 1625 Query 1763 CCGAGACGCACTGCTCGCCGAGCTGGGCCGCCTGGAGCG 1801 || || ||||| ||| ||||| || || |||| ||| Sbjct 1626 TCGCGATGCACTCAACGCGGAGCTTGGTCGTCTGGCGCG 1664 Score = 89.7 bits (98), Expect = 1e-13 Identities = 277/418 (66%), Gaps = 8/418 (2%) Strand=Plus/Plus Query 177 ATCCATCGCCCAAGCCAGACAACGCGCCCAATGATATCCAAGTCAGAAAGCTGGTCCTTG 236 ||||| | ||| ||| || ||||| ||||| || |||| ||| | || ||| || Sbjct 56 ATCCAACCGCCAGCCCATACTACGCGGCCAATTATCTCCAGGTCGTTCAACTTATCCCTG 115 Query 237 GGGACGACCATGTCCTTATACGCCTTGTTTTCGCTGATGATCGCGATAGAGCCATCGAAC 296 ||||| ||||| || || |||||||| || |||||||| ||||| || |||||| Sbjct 116 GGGACAACCATATCGCGGTAGGCCTTGTTCTCACTGATGATGTGAATAGACCCGTCGAAC 175 Query 297 TGCCGTTGTAAGCGCTTGGCGTAGAGCTGATCCCCGACCCGAATCACATAGATCGCTTCA 356 ||||| || | | || || ||||| || || | | ||| || || || | || || Sbjct 176 TGCCGCTGGAGCCTTTTCGCATAGAGATGGTCATCCAGCCGGATGACGTATACAGCCTC- 234 Query 357 TCCCGCACG-GTTCTAAGGTCATGGTCGATAACAACGGCGTCGCCATCCGACAGGAGGGG 415 |||| || | | || || ||||| || | || | |||||||| || || Sbjct 235 TCCCTCAAGCGAGCTGCGGCTGTGGTCAATCATCACAGTATCGCCATCGCTTAGAAGTCC 294 Query 416 TTCCATGGAGTCGCCCCCGACCCTTACTGCCGACATCCTGGTTGGCTCTAACCCCTTCTT 475 ||||| || || || | || | | ||| |||| | | | || | || | ||| Sbjct 295 CTCCATCGAATCCCCGTCCACTCGGATTGCGGACAGTCGCGCAGAGTCCAGGCCTTGCTT 354 Query 476 GCTCAAGC-TGTA-GCGCGTAAAGGCAAGCTGCGTAAGAACGTGTGCGCCTTCGCTCCAG 533 || |||| ||| ||| || || |||||||| || || || || |||||||||||| Sbjct 355 GC-GAAGCGAGTACGCG-GTGAACGCAAGCTGGGTTAGGACAGTAGCCCCTTCGCTCCAG 412 Query 534 CTTCCATGTCCCGCGCTGACCCT-CGCGTCATACAGGGGGACGTAGACATATTGGTCC 590 || |||||||| || || | ||||| |||| || ||||| | || | |||| Sbjct 413 GCGCCGTGTCCCGCACT-ACAGTGGGCGTCGTACAAAGGCACGTAAGCGTACTTGTCC 469 >seq8746 Length=2069 Score = 129 bits (142), Expect = 1e-25 Identities = 136/175 (78%), Gaps = 7/175 (4%) Strand=Plus/Minus Query 8925 ACGGCCAAGAACCGCA--CCGTCCACTGAGCGAAACCGCCCCGGCCTGGCCGGGACGGTC 8982 ||||||| |||| | || | || | ||||||| ||||||||| | | ||| ||||| Sbjct 1773 ACGGCCAGGAACAACTTGCCCTGCATTAAGCGAAATCGCCCCGGCGCG-CTGGGGCGGTC 1715 Query 8983 TGCCGGACGTGGTGGTCCGGTACTGATGAGCAGCCACCCATGACGAACGAA--ACCAAGA 9040 ||||||||||||| |||||||||||||||||||||||||||||| ||||| ||| | | Sbjct 1714 TGCCGGACGTGGTTGTCCGGTACTGATGAGCAGCCACCCATGACAGACGAAACACCCAAA 1655 Query 9041 CAGACCGCCAGCGCCGCCTGGCGCGGGAACGCCAACGAGCGAAGCGCGAGCGCGA 9095 ||| ||| | ||||||||| | || || |||| || ||||| ||||||| Sbjct 1654 CAG--CGCAAAACCCGCCTGGCATGCGAGCGTAAACGTGCCCAGCGCAAGCGCGA 1602 >seq8907 Length=1284 Score = 87.8 bits (96), Expect = 4e-13 Identities = 265/400 (66%), Gaps = 16/400 (4%) Strand=Plus/Plus Query 4391 ATCCTGGGTGAAATGGGCATCAAGCCGGCTGGCACGATCCCGGAAATGGCCGACCAGATC 4450 ||||| | || ||| ||||| | ||||| || || ||| |||| |||||||||| Sbjct 336 ATCCTTCGCGAGATGAGCATCCAACCGGCCCCGACCATGTCGGTGATGGTCGACCAGATC 395 Query 4451 GCCGAGGAACTGGCCGCCAGCGGCCGCCCGCTGATCATCGACGAAATGGACCACCTGGTC 4510 || ||| | || || ||||| ||||||||| | |||||||| || | ||||| || Sbjct 396 GCTGAGCAGTTGTCCAAGAGCGGGCGCCCGCTGTTGATCGACGACGTGCAATACCTGCTC 455 Query 4511 ------GCCGCTGGCCAGGTCGAGCTGATTCGTGATCTGTACGAGTCCAGCCAAGCCTCC 4564 |||| | |||| || |||| || ||| ||| | ||||| ||| || Sbjct 456 GAAAAAGCCG-TAGCCA--ACGTCCTGA-CCGACATC--TACAACGCCAGCGAAGGGACC 509 Query 4565 ATCTTGCTGATCGGCGAGGAAATGCTGCCGACCAAGCTGAAGAAGTTCGAACGCTTCCAT 4624 || | ||||||||||| ||| |||| | ||| |||| | |||||| | ||| Sbjct 510 ATTGTCCTGATCGGCGAAGAACGTGTGCCCGGTAGCCTGGCGAAGCTGGAACGCCTGCAT 569 Query 4625 GGCCGCGTGCTGAGCTGGGTTCCGGCCCAGCCAGTCTCCCTGGAGGACGCCCGCAACCTG 4684 ||| |||||| ||||| || || |||| | | ||||||| || ||| |||| Sbjct 570 AACCGGGTGCTGGAGTGGGTACCTGCGCAGCGCGCCACCCTGGACGATCTGCGCGCCCTG 629 Query 4685 GCGCCGGTCTACAGCCCCGGAGTGGC-TATCGCTGACGACCTGCTCGCGCACTTGGTGAA 4743 || | ||| | |||||| | || ||||||| || |||| | || || || Sbjct 630 GC-CGAGTCAAGCTACCCGGAATTGCACTTCGCTGATGATTTGCTGGATGACCTGCGCAA 688 Query 4744 GAA-GTCACTGGGCTCTGTCCGTCGCGTCGCGGTGAACCT 4782 ||| || | | |||| | ||||| || ||||| ||||| Sbjct 689 GAAGGTGAAT-GGCTGCCTGCGTCGTGTAGCGGTCAACCT 727 >seq1016 Length=5115 Score = 84.2 bits (92), Expect = 5e-12 Identities = 166/241 (69%), Gaps = 11/241 (5%) Strand=Plus/Plus Query 11033 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTCTGGTCGGCACG--CAACAA 11090 |||| ||||| | |||||| ||| ||||||||||||| | || | || |||| | Sbjct 1150 AACC-CGCGGGGTGCGCAACCGCAATCCCGGCAACATCGATTA--CGTCCCGGCCAACCA 1206 Query 11091 CTGGCAGGGCCAGCTCCCGCACAACCCGAAGGTCGAGCCGCGTTTCGCCCGTTTCGATAC 11150 ||||| ||||| || | ||||| | ||| || || ||||| || ||||| Sbjct 1207 ATGGCAAGGCCAACTGAAACCAGACCCGGCTATAGAGAAACGCTTTGCCCGGTTTGATAC 1266 Query 11151 CGCACATAACGGAATCCGCGCCTTGGCAAAGCTGCTGCTGAACTAT---CGCAAGGTCCA 11207 | | ||||| ||||| ||| ||| ||||||||||||| |||| |||||| || Sbjct 1267 GCCGGAAAACGGCATCCGTGCCCTGGGCAAGCTGCTGCTGACCTATCAGCGCAAG---CA 1323 Query 11208 CGGCCTGCGCACCGTCGAATCGTTGATCGCACGCTGGGCGCCGTCCAACGAGAACGACAC 11267 ||| | ||||| | || | ||| ||||||||||||||| |||||||| || Sbjct 1324 CGGGTTAAAGACCGTGAAGGCGATCATCAGTCGCTGGGCGCCGTCCGTGGAGAACGATAC 1383 Query 11268 C 11268 | Sbjct 1384 C 1384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116367381083998