Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq3381 122 7e-23 seq1351 105 6e-18 seq8653 100 2e-16 seq4240 82.4 6e-11 >seq3381 Length=12314 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| ||||| | || || || | || || ||||| || |||||||| || Sbjct 1188 ATACCACCACGGAGTCTAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCA 1129 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | | |||||| |||||| | ||| || ||||| | ||||||||||| ||||| || Sbjct 1128 CCGAGGGTACGACCATCTTCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCGGGT 1069 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| |||||| || | | |||| |||||| | | || Sbjct 1068 GGAATACCTTCCTTGTCTTGAATCTTAGCCTTGACATTCTCAATGGTGTCCGAGCCCTCA 1009 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||| ||||| || ||||| || ||||| |||||||| Sbjct 1008 ACCTCAAGAGTGATCGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 959 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| ||||| | ||| || || | |||||||| |||||||||||||| ||| Sbjct 1416 ATACCTCCACGGAGTCTGAGAACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCG 1357 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | | ||||||| ||| || ||||| || || || |||||||||| || || || || Sbjct 1356 CCAAGAGTACGACCATCCTCGAGTTGCTTGCCGGCAAAGATGAGACGTTGCTGATCGGGT 1297 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || ||||| || | | || | || || | || Sbjct 1296 GGGATACCCTCCTTATCTTGGATCTTGGCCTTGACGTTCTCGATAGTATCCGAACCCTCA 1237 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || ||||||| ||| || ||||| || ||||| Sbjct 1236 ACCTCGAGGGTGATAGTCTTTCCGGTCAAAGTCTTCACAAAGATTTGCAT 1187 Score = 95.1 bits (104), Expect = 1e-14 Identities = 167/242 (69%), Gaps = 1/242 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || ||||| | || | ||| | || || ||||| || |||||||| || Sbjct 960 ATACCTCCTCGCAGTCTGAGGACGAGATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCA 901 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | | || ||| ||| || || || || ||||| ||||||||||||| || || || Sbjct 900 CCGAGGGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCGGGT 841 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || ||||| || | | ||||| ||||||| | || Sbjct 840 GGGATACCCTCCTTATCTTGGATCTTAGCCTTAACATTTTCAATAGTGTCGGAGCCCTCA 781 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTAATTA 114392 || |||| || | || ||||| |||| ||| || ||||| || ||||| | ||||| | Sbjct 780 ACCTCCAGTGTGATGGTCTTGCCAGTCAAAGTCTTAACAAAGATTTGCAT-GTTTAATGA 722 Query 114393 TT 114394 || Sbjct 721 TT 720 >seq1351 Length=12664 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || || || | || || || ||||||||||| || |||| Sbjct 5159 ACCTCCACGAAGTCTCAATACCAAGTGAAGGGTGGACTCCTTTTGAATGTTATAGTCGCC 5100 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| ||| ||| ||||| || || || || ||||||||||||| ||||| || || Sbjct 5099 AAGAGTGCGACCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGG 5040 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || || || ||||| |||||| || | | || | |||||| | | || || Sbjct 5039 GATTCCCTCCTTGTCTTGAATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCCTCAAC 4980 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || ||||| || || || || || || |||||||| Sbjct 4979 CTCAAGTGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 4932 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | || || || |||||||||||||| || Sbjct 4933 ATACCTCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCA 4874 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | | || || ||| ||||| || || || || ||||||||||||| ||||| || Sbjct 4873 CCGAGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGT 4814 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| ||||| || | | || | |||||||| ||| Sbjct 4813 GGAATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGATCCCTCG 4754 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || || ||||| || ||||| || ||||| Sbjct 4753 ACCTCCAGAGTGATGGTCTTTCCAGTTAGAGTCTTCACAAAGATTTGCAT 4704 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || || || |||||||||||||| || Sbjct 4705 ATACCTCCACGGAGACGAAGAACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCA 4646 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | | || || ||| |||||||| || || || |||| | ||| || ||||| || Sbjct 4645 CCGAGGGTGCGTCCATCCTCAAGTTGCTTGCCGGCAAAGATCAAACGTTGCTGGTCGGGT 4586 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||||| || | | || | |||||||| ||| Sbjct 4585 GGGATACCCTCCTTGTCCTGGATCTTGNNCTTGACGTTCTCGATGGTGTCGGATCCCTCG 4526 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| || || || || || || |||||||| Sbjct 4525 ACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 4476 >seq8653 Length=1535 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | || || || || | ||||| || || ||||||||||| ||| Sbjct 191 ATTCCTCCACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCG 250 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | | ||| ||| ||||||||||| || || || |||| | ||| ||||| || || Sbjct 251 CCGAGAGTGCGACCGTCTTCAAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCGGGT 310 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||||||||| ||||||| || | | || | ||||| | | ||| Sbjct 311 GGGATACCTTCTTTGTCTTGAATCTTTGCCTTGACGTTCTCGATAGTGTCAGAGCCCTCG 370 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || || |||| || |||||||| || ||||| Sbjct 371 ACCTCTAGTGTGATGGTCTTTCCAGTCAATGTCTTTACAAAGATTTGCAT 420 >seq4240 Length=2116 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || ||||| | || || || || || || ||||| || Sbjct 1444 ATACCTCCACGGAGACGGAGGACCAAATGGAGAGTTGACTCCTTCTGGATATTGTAGTCA 1385 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||| || | || || || || |||||||||| || ||||| || Sbjct 1384 GAGAGGGTACGACCATCCTCCAACTGCTTTCCGGCAAAGATGAGACGTTGCTGGTCGGGT 1325 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| ||||| || | | || | |||||| | | ||| Sbjct 1324 GGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAGCCCTCG 1265 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || || || || |||||||| ||||||||||| Sbjct 1264 ACCTCAAGGGTAATAGTCTTACCAGTGAGTGTTTTTACGAAAATCTGCAT 1215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419989866807924