Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq13335 320 3e-82 seq1043 244 2e-59 seq3533 158 2e-33 seq19281 118 2e-21 seq19 105 1e-17 >seq13335 Length=4250 Score = 320 bits (354), Expect = 3e-82 Identities = 729/1080 (68%), Gaps = 25/1080 (2%) Strand=Plus/Plus Query 244475 ATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG 244534 || |||||||||||||| || || | ||| || ||||| || | ||| ||| |||||||| Sbjct 1799 ATAAAGACGTCGGCCAGACCTTGGATGCCAATACCGATTGGGCGGTGACGCATGTTGGAG 1858 Query 244535 C-GCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGT 244593 || || |||||||||| ||||| |||| | |||||| | |||||||||||| || || Sbjct 1859 GTGCGTG-CTTCGGGCACAGGGTAGTAGTTACGGTCGATGATCTTGTTGAGGTTACGTGT 1917 Query 244594 GATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGG-----GATCCTCG 244648 |||| | | || || ||| | || ||| ||||| || | | ||| Sbjct 1918 GATCGTCTTGGTCACCTCAAACAGGTGTTGGTGGTCAAACTCGGCGGTTGTTGTTGCTC- 1976 Query 244649 GCGATGGTGATCCTC---ACAAACTCGTTGAGGGCGA-CGCTGGCCAGGTTGCAGACGGC 244704 | ||| | | | ||||||| | || || | || || | ||||||||||| || Sbjct 1977 -CATTGGACACCTGCTTGACAAACTTGGGCAGTGCAATCGATG-CAAGGTTGCAGACAGC 2034 Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 ||||||||| | |||||||||| ||||||||||| ||||| || || ||| || Sbjct 2035 CACCTCCTCTGGCGACGTGTACTGGATGATCTCGGTGCACAGGTTGCTCGACGAGATAGT 2094 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCC 244824 ||| |||| ||| || ||||||||| | ||||| | ||||||||| || ||| | || Sbjct 2095 GCCGAGGTTCTGTTGGTTGGACTTGCCATTGCACGAGTCCTTGTATAGGATGTACGGGGT 2154 Query 244825 CCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCT 244884 || ||||||| ||||| |||||| | ||| ||||| ||||||| || | Sbjct 2155 GCCTGTCTCGATCTGGGACTCGAGGATCGAGAACCACAGGTCTTGTGCCTTGATGGTGCG 2214 Query 244885 GCGAGCCTTGCCCTCT---GCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCA 244941 ||| || ||| | || |||||||| ||| || | | ||||| |||||| Sbjct 2215 GCGTGCGAGGCCGGGTGTCGCTTCGTAGCGCAGGTAGAGTTCGTTGAACTTCTCGCCCCA 2274 Query 244942 GACCTCGTCTAGGCCGGGGCACGACG-CCGGGCACATGAGACTCCACTCGCCGCCGTCCT 245000 | ||| | ||||| ||| | || |||||| | ||| ||| ||| || | ||| Sbjct 2275 GGTGTCGGCAAGGCC-TGGCGCCTCGTTCGGGCAGAAGAGTGACCAGTCGGCGTTGGCCT 2333 Query 245001 TGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCT 245060 || | |||||| || | ||| | ||||||||| || | ||||||||| | | | | Sbjct 2334 CAACGCGCTGCATAAACAAGTCAGAGATCCAGAGTGCGTAGAAGAGGTCGCGAGCACGCA 2393 Query 245061 GCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGG 245120 ||| ||| ||| |||||| | ||| || | || || | || |||| ||||||| | Sbjct 2394 TCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCCATGATGTCGGCGTGCCATG 2453 Query 245121 GCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCT 245180 |||||| ||||| || | |||||| |||||| ||| ||||||| || ||| | Sbjct 2454 GCTCCAGGTAGATGGCAAAGGCGCCCTTGCGCTTGCCGCCACCCTGGT-CAACATAACGT 2512 Query 245181 CGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCC 245239 || | |||| |||| ||||| | || || | ||||| ||| ||||||||||| Sbjct 2513 GCAGTGTCGTTAAAGACACGCAGCATTGGAACCAGTCCGTTCGAGGTACCGTTGGTGCCG 2572 Query 245240 TTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGC 245299 |||||| | || | | | | || ||| | |||| || | || ||||| | Sbjct 2573 CGGATGTACGAGCGCGCGGCACGGATCTTGTGCACCGACAAACCGATGCCTCCGGCCGAC 2632 Query 245300 TTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTC 245359 ||| ||| | ||||| ||| | || || || || || || ||| |||| Sbjct 2633 TTGCTGATCAATGCGCACTGCTTCAGAGTATCGTAGATTCCATCGATAGAGTCGTCCTTC 2692 Query 245360 ATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTG 245419 || | | ||| ||||| || |||| ||||||| | || ||| |||||||||||| ||| Sbjct 2693 ATCTGCACCAGGAAGCATGACGACATCTGGGGCATTGGCGTGCCCGAGTTGAACAGCGTG 2752 Query 245420 GGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCG 245479 || |||| || || || ||| | ||| || | | |||| || |||| ||||| Sbjct 2753 GGCGTGGCATGCGTGAACAGGCGACGCGACAGCAGCTCGTAGGTGTGGATGGCGGCGTCA 2812 Query 245480 ATGTTGTCGCCGTGGATCTGCAGGGCG-CAC-CTCATGAGGGTGTGCTGGGGCGTCTCGA 245537 |||| | |||||||| ||| | || ||| | ||| || |||||||||| ||||| Sbjct 2813 ATGTCGCGGCCGTGGA--TGCCGATCGACACACGCATCAGCATGTGCTGGGGACGCTCGA 2870 >seq1043 Length=1979 Score = 244 bits (270), Expect = 2e-59 Identities = 412/590 (70%), Gaps = 26/590 (4%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| |||||| |||||| ||| ||||||||||||||| || || |||||| ||| Sbjct 784 ATCAAGCACCCGGACATTTGGAACATGTACAAGAAGGCAGAGGCATCTTTCTGGACAGCC 725 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAG-TCA--CTGTCTGAGAACGA- 42400 || ||||| || ||||| | |||| || |||||| || ||| || ||||| Sbjct 724 GAAGAGATCGATCTGGCAAGCGACATTCACGATTGGGAGAACAAGCTGAACGATAACGAG 665 Query 42401 --AAAGTTTTTC-CTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAA 42457 | ||| || ||| || ||||||||||||| ||||| || |||||||| ||||| Sbjct 664 CGTCACTTTATCACTC----ACGTACTGGCCTTCTTTGCCGCATCGGACGGCATTGTCAA 609 Query 42458 TGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTA 42517 ||||| || ||||| | |||||| ||||||||| | ||||| || || ||||| Sbjct 608 CGAGAATCTTGCCACACGCTTCATGTCTGAGGTGCAGATCCCAGAGGCACGTTGTTTCTA 549 Query 42518 CGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---A 42574 || ||||| || ||||| |||||| | ||||||||| || || || |||| | Sbjct 548 TGGATTCCAAATCGCCATCGAGAACATCCACTCTGAGACCTA---CAGTCTTCTCATCGA 492 Query 42575 CACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCC 42634 ||| |||||| | | ||| || ||| ||| ||| | ||||| ||||| || || Sbjct 491 CACCTACATCAAGAACACCGAGAAGAAGAACATGCTCTTCCACGCCATCGAGACTATCCC 432 Query 42635 CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGC---AAC 42691 | | | |||||||| || |||||||| | ||||||| || |||| | Sbjct 431 CGCCGTTAAGAAGAAAGCCGACTGGGCCTTGCGCTGGATC------ACCAACGCTCGCTC 378 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 |||| |||| | |||| |||||| |||| |||||||| |||||||| ||| || Sbjct 377 ATTCGCCGAGCGTTTGGTCGCCTTTGCCGCTGTCGAGGGTATCTTCTTTAGTGGCAGTTT 318 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 | ||| ||||| ||||||||| || | | |||| ||| | | ||||||||||| Sbjct 317 CTGCTCGATCTTTTGGCTCAAGAAGCGCGGTTTAATGCACGGCTTGTCGTTCTCGAACGA 258 Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGT 42861 || ||||| | |||||||| |||| | ||||||||||| | |||| Sbjct 257 GCTGATCAGTCGTGACGAGGGTTTGCACTGCGACTTTGCCTGTTTGCTGT 208 >seq3533 Length=1137 Score = 158 bits (174), Expect = 2e-33 Identities = 305/445 (69%), Gaps = 15/445 (3%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 ||||| ||||| ||||| || ||||| || ||||||||||| || ||||| | |||||| Sbjct 527 CTGGCATTCTTTGCCGCATCAGACGGTATCGTCAATGAGAATCTCGCCACTCGATTCATG 586 Query 42483 AAAGAGGTGC-AGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAA 42541 ||||| | | ||| ||||| ||||||||||| ||||| ||||| || || ||||| Sbjct 587 TCTGAGGTACAAATAC-CAGAGGCCCGCTGCTTCTATGGCTTTCAGATCGCGATTGAGAA 645 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | | ||| | ||| ||| || || |||| ||| | | | | | | Sbjct 646 CATTCACGCAGAGACCTACAGTCTTTTGATCGACACATACGT--TAAAAGTAGCACAAAG 703 Query 42602 TAAC--GGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGG 42659 ||| | ||| ||||| || || |||||||| ||| | | ||||||||||| || ||| Sbjct 704 AAACAGGAGCTTTTCAACGCGATAGAGACGATCCCCGCCGTAAAGAAGAAGGCAGAGTGG 763 Query 42660 GCGCTCAACTGGATCGAGAGTCCCGACGC---AACGTTCGGCGAGAGGCTGGTAGCCTTT 42716 ||||| ||||||| || || | | |||| ||| | |||| || ||| Sbjct 764 GCGCTGCGCTGGATC------ACCAACTCTTGTTCATTCGCCGAACGTTTGGTGGCATTT 817 Query 42717 ACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776 | || || ||||| ||||||||| ||| ||| |||||| |||| | ||| | Sbjct 818 GCTGCGGTTGAGGGTATCTTCTTCAGCGGCAGCTTTTGTGCCATCTACTGGTTGAAGAAA 877 Query 42777 AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTG 42836 | || | ||||| || || ||||| || ||||| || ||||| | |||||||| || Sbjct 878 AGGGGTTTAATGCCAGGCCTTACCTTTTCCAACGAGCTGATCAGTCGTGACGAGGGTCTA 937 Query 42837 CATAGGGACTTTGCCTGCCTCCTGT 42861 || | |||||||| ||| | |||| Sbjct 938 CACTGCGACTTTGCTTGCATGCTGT 962 >seq19281 Length=570 Score = 118 bits (130), Expect = 2e-21 Identities = 282/424 (67%), Gaps = 2/424 (0%) Strand=Plus/Plus Query 245189 TTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAG 245248 ||||| | ||||| | || || | ||||| || |||||||||||| |||||| Sbjct 18 TTGAACACACGCAGCATGGGGACGAGACCGTTGGATGTGCCGTTGGTGCCACGGATGTAT 77 Query 245249 GCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATG 245308 | | | | | | || ||| ||||| | || | || || || |||||||||| Sbjct 78 GAACGCGAGGCACGGATCTTGTGGATGGCGACACCGATGCCACCAGCAGACTTGGAGATG 137 Query 245309 AGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGC 245368 || ||||| ||||| ||||| |||||||| || |||| |||||| | || Sbjct 138 AGAGCGCACTGCTTGAGAGTGTCGTAGATGCCCTCGATCGAGTCCTCCTTCATCTGGACG 197 Query 245369 AGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCG 245428 || ||||| || |||| || || |||| ||| | ||||||||| || || ||||| Sbjct 198 AGGAAGCACGACGACATTTGAGGGATGGGAGTGCCAGCGTTGAACAGGGTTGGCGTGGCG 257 Query 245429 TGGGTAAAGTAGCGGCT-CGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTC 245487 || || || || ||| |||||| | ||| || |||| || || |||| | Sbjct 258 TGAGTGAA-CAGACGCTGCGAGAGCAGGTTGTAGGTGTGGATGGCGGCATCAATGTCGGT 316 Query 245488 GCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCTC 245547 ||||||||| | | | | ||| || |||| ||||| ||||||| | || Sbjct 317 GCCGTGGATGCCAATCGAGACACGCATCAGCATGTGTTGGGGACGCTCGATGATGACGTC 376 Query 245548 GGGTCCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAA 245607 | ||||| ||| ||||||||||||||| |||||||| || || | ||| |||| Sbjct 377 GTTGACCTTGTGCAAGTAGGAGCGCTCGAGTGTCTTGAAGCCGAAAAAGTCATAGTCAAA 436 Query 245608 GTCG 245611 |||| Sbjct 437 GTCG 440 >seq19 Length=770976 Score = 105 bits (116), Expect = 1e-17 Identities = 294/444 (66%), Gaps = 14/444 (3%) Strand=Plus/Plus Query 42420 ATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTC 42479 ||||| || || || || || ||||||||| || ||||| ||||| || | ||| Sbjct 360133 ATACTTGCTTTTTTTGCTGCAAGTGACGGCATTGTAAATGAAAACCTTGCAGTGAACTTC 360192 Query 42480 ATGAAAGAGGTGCAGTACTTT--GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAG 42537 |||| || || ||| ||| || || || || || || ||||||||||| || | Sbjct 360193 ATGAGCGAAGTACAG--CTTCCCGAAGCCCGTTGTTTTTATGGCTTCCAGATCATGATGG 360250 Query 42538 AGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCG 42597 | ||| | |||||||| || || ||| || | || || || ||||| | | Sbjct 360251 AAAACATCCACTCTGAAACCTATGCGCTGCTGATCGATACCTATATTAAAGATCCTGAAG 360310 Query 42598 AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657 | || |||||||| | ||| | |||||| | || || | ||||| || || || | Sbjct 360311 AAAAAGACAGGCTGTTCCATGCCGTAGAGACGGTTCCTTGTGTAAAGAAAAAAGCAGAAT 360370 Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 |||| | |||||| ||| | || || || | ||| | |||| || || Sbjct 360371 GGGCATTGCGCTGGATTGAG------GGCGGAAATTTTGCCGAACGTTTGGTGGCTTTCG 360424 Query 42718 CCGCCGTCGAGGGCATCTTCTTC-TCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776 |||| || || ||||| |||||| |||| | |||| || ||||||||| | || | Sbjct 360425 CCGCAGTGGAAGGCATTTTCTTCAGCGGGAG-CTTCTGTTCGATCTTCTGGTTGAAAAAA 360483 Query 42777 A-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCT 42835 | ||| | |||||| || || ||||| || || | || ||| || |||||| | Sbjct 360484 AGAGGCCT-GATGCCAGGGCTAACCTTTAGTAATGAGTTGATTTCCAGAGATGAGGGGAT 360542 Query 42836 GCATAGGGACTTTGCCTGCCTCCT 42859 |||| | || ||||||||||| || Sbjct 360543 GCATTGTGAATTTGCCTGCCTGCT 360566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944006001717520