Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_009235.2 Length=48674 Score E Sequences producing significant alignments: (Bits) Value seq373 174 5e-39 seq6137 84.2 7e-12 seq278 80.6 8e-11 >seq373 Length=63667 Score = 174 bits (192), Expect = 5e-39 Identities = 245/344 (71%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 3263 CGGATCTACAAAATCCCGGCTCACATGGTCAACGAGCTGGAGCGGGCGACGTTCAGCAAC 3322 ||| |||| ||||||||| | || ||||| | ||||| | ||||| || |||| Sbjct 16539 CGGCTCTATAAAATCCCGCCACATATGGTGCAGATGCTGGCGAAAGCGACCAACAACAAC 16598 Query 3323 ATCGAGCATCAGTCGCTCCAGTTCGTGATCTACACGCTGCTGCCGTGGGTGAAACGGCAT 3382 |||||||| ||| || ||||||||||| || ||||||||| | ||| ||||||| ||| Sbjct 16599 ATCGAGCACCAGGGCCTGCAGTTCGTGATGTATACGCTGCTGGCCTGGCTGAAACGCCAT 16658 Query 3383 GAACAGGCGAAGACGCGCGACCTGCTCTTGCCGTCGGAGCGCAAGCAGTACTTCATTGAA 3442 || || | |||||| ||||| |||| || ||| | | | ||| || Sbjct 16659 GAGGGTGCACTGCAGCGCGATCTGCTTCTGCCCAGCGAACGCCGCGATTTGTACATCGAG 16718 Query 3443 TACAACCTCGCGGGGCTCTTGCGCGGCGATCAGTCGTCGCGCTACGCCGCGTATGCGGTC 3502 | |||| | | ||||| ||||| ||||| ||| ||| ||||| | |||||||| | Sbjct 16719 TTCAACGTTTCCGGGCTGTTGCGAGGCGACCAGAAGTCACGCTATGAATCGTATGCGCTG 16778 Query 3503 GGGCGCCAGTGGGGGTGGCTGTCGATCAACGACATTCGGCGGCTGGAGAACATGCCGCCG 3562 || ||||||||||| ||||| || | ||||| || ||||| ||||||| ||||||| Sbjct 16779 GGCCGCCAGTGGGGATGGCTATCCACTAACGATATCCGGCGTATGGAGAATTTGCCGCCA 16838 Query 3563 GTCAAGGGCGGCGACATCTACCTGAGTCCGATGAACATGGTCGA 3606 | ||||| |||| ||||||| ||| | || |||||||| Sbjct 16839 ATTGCTGGCGGGGACAAATACCTGACGCCGCTCAATATGGTCGA 16882 >seq6137 Length=2664 Score = 84.2 bits (92), Expect = 7e-12 Identities = 159/225 (71%), Gaps = 12/225 (5%) Strand=Plus/Minus Query 19348 TGTACGGGATCGATCTGAAATGGGCGTTTCCGGGTGACGGATCCGCTGGCGACACGCAGC 19407 ||| ||| |||| | |||| |||| |||||| || || ||| | || || |||| Sbjct 708 TGTTCGGCATCGGTTTGAAGTGGG-GTTTCCC--TGCTGG---CGCCGAAGATACCCAGC 655 Query 19408 GAACGGAGATCTGGTACAGCCGCACGCCGAATCGCGACGACGCGACCAAGTTCTCCGACT 19467 | |||||| ||||||||| || ||| || | || || |||||| ||| | | || | Sbjct 654 GGACGGAGCTCTGGTACAACCCGACGAACAACCTCGGCGCCGCGACGAAGCTGGCGGATT 595 Query 19468 TCGCGTATCCGCAGGC-GTCGACGTCGTAT-CAGGGGCTCGCGGTCGGGCAGGT-GTTTT 19524 | || || |||||||| | | || || || ||| ||| || | ||||| | ||| | Sbjct 594 TGGCATACCCGCAGGCTGACTAC--CGCATGCAGTCGCT-GCTGGCGGGCGCGCAGTTCT 538 Query 19525 ATTTCTGGGCGCGCCTGGTCGACACGTCCGGCAACGTCGGGCCGT 19569 ||||||||||||||||| ||| |||||||| |||| |||| Sbjct 537 TCTTCTGGGCGCGCCTGGTGGACCGCACCGGCAACATCGGTCCGT 493 >seq278 Length=18759 Score = 80.6 bits (88), Expect = 8e-11 Identities = 167/246 (68%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 17910 GTCCCGACAAACTACGACCCGGAGACGCGTACGTACTCGGGTACATGGGACGGTACGTTC 17969 || ||| | ||||| ||||| ||||||| ||| |||| |||||||| ||||| Sbjct 3390 GTGCCGTCGAACTATAACCCGCAGACGCGGCAATACAGCGGTATCTGGGACGGAACGTTT 3331 Query 17970 AAGGCAGCATGGACGAACAATCCGGCGTGG-GTCTACTACGGCCTACTTCTCGACAAGCT 18028 ||| | |||| | ||||| ||||| ||| |||| | | | || | || || Sbjct 3330 AAGCCGGCATACAGCAACAACCCGGCCTGGTGTCTG-TGGGATATGCTGACCCACCCGCG 3272 Query 18029 CAACGGATTGGGTGACCGTGTCGATGCTTCGATGGTCGATAAGTGGGCGCTGTACGCAAT 18088 | |||| |||| | ||| | | ||| || || ||||| ||||||||||| | || Sbjct 3271 CTACGGCATGGGGAAACGTCTTGGTGCGGCGGATGTGGATAAATGGGCGCTGTATGTCAT 3212 Query 18089 CGCGCGTTACTGCGACGAACTCGTGTCCGACGGGAAGGGCGGCAAGGAGCCGCGCTTCAC 18148 || | ||||||||| | ||| | ||||| |||||| |||||||||| |||| Sbjct 3211 CGGCCAGTACTGCGACCAGTCAGTGCCGGACGGTTTTAGCGGCACGGAGCCGCGCATCAC 3152 Query 18149 CTGCAA 18154 ||| || Sbjct 3151 CTGTAA 3146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155583031761864