Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_009236.1 Length=36690 Score E Sequences producing significant alignments: (Bits) Value seq19415 147 5e-31 seq7329 120 7e-23 >seq19415 Length=1017 Score = 147 bits (162), Expect = 5e-31 Identities = 204/286 (71%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 4172 CTACATCGCGATCGACACCACGGGCATGGGGCAAGGCGTCTACCAGCTCGTGCGCAAGTT 4231 |||||||| |||||| | ||| |||| ||| ||||| ||||| ||| |||| Sbjct 972 CTACATCGGGATCGATATCACCGGCACGGGTTCCGGCGTGGCGCAGCTGGTGAAGCAGTT 913 Query 4232 CTTCCCGGCCGCCGTCGCGCTGAACTACTCGCCCGAGGTGAAAACCCGCCTCGTGCTCAA 4291 ||||||| | | | || | | |||||| ||||| || ||||||||||| ||||| || Sbjct 912 CTTCCCGAACATCACCACGTTCAGCTACTCACCCGAAGTCAAAACCCGCCTGGTGCTGAA 853 Query 4292 GGGCCAGTCCGTCGTCCGGAACGGCCGCCTGCAATTCGACGCGGGCTGGACCGATCTGGC 4351 || | |||| || |||||| | ||| | ||||| ||||||||||| ||| |||| Sbjct 852 GGCTTACGACGTCATCAAAAACGGCAGGCTGGAGTTCGATGCGGGCTGGACGGATATGGC 793 Query 4352 GGCGGCGTTCATGGCGATCAAACAGACGATGACGGCGAGCGGCCGTCAGGCGACCTACAC 4411 | | | || ||||| ||| | || || || || ||| || | || ||||| Sbjct 792 GCAGTCATTGATGGCTATCCGCAAAACAATCACCGCCTCCGGGCGCATGTTCACTTACAC 733 Query 4412 CGCTGGCCGTACCGACGAGACGGGCCACGCCGACCTGGCGTGGGCG 4457 || || || || |||||||||||||| |||||||| ||||||||| Sbjct 732 GGCCGGTCGCACAGACGAGACGGGCCATGCCGACCTAGCGTGGGCG 687 >seq7329 Length=1002 Score = 120 bits (132), Expect = 7e-23 Identities = 199/286 (70%), Gaps = 10/286 (3%) Strand=Plus/Plus Query 5285 GGGAAGAAGGACGGCATCCAGCTCATTCCCGTGTCCGAGGTCGCCGCGAAGGACGAGTTC 5344 || ||||| |||||||| |||||||| || ||| |||||| || || |||||||| ||| Sbjct 135 GGCAAGAAAGACGGCATTCAGCTCATCCCGGTGAGCGAGGTTGCGGCCAAGGACGAATTC 194 Query 5345 TTCAACATCAAGAACGTGACGCGCGATGACCTGCTCGCCGCACACCGCGTGCCGCCGCAG 5404 | ||||| ||| | | || || || |||||||| || ||| | || |||||| Sbjct 195 AGCTCGATCAAAAACATCAGCCGTGACGATCTGCTCGCGGCGTTGCGCATTCCACCGCAG 254 Query 5405 TTGCTCGGCATCGTGCCGAGCAATTCGGGCGGGTTCGGCAC---GCCGGATACCGCTGCA 5461 ||| | |||||||||||| || ||||||| || || | || ||| | |||| Sbjct 255 TTGATGGGCATCGTGCCGCAGAACGCGGGCGGTTTTGGGTCGTTGCGGGAGGCTGCTG-- 312 Query 5462 CGCGTGTTCGGGCG--CAACGAAATCAGGCCGCTACAGGCACGCTTCGCCGAGCTGAACG 5519 ||| ||||| |||||| | |||| | ||||| | | ||| || | |||| Sbjct 313 ---AGGTTTGGGCGGTCAACGAGCTGGAGCCGTTGCAGGCGAGGCTGGCCCAGGTCAACG 369 Query 5520 ACTGGCTCGGCGACGAGGTCGTGAGGTTCGACGATTACGAGATTCC 5565 | ||||| || || ||||| || |||||| | || | ||| |||| Sbjct 370 AGTGGCTGGGTGAAGAGGTTGTCAGGTTCAAGGAGTTTGAGCTTCC 415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117247086111848