Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_009818.1 Length=36409 Score E Sequences producing significant alignments: (Bits) Value seq3931 291 2e-74 seq8746 122 2e-23 >seq3931 Length=1953 Score = 291 bits (322), Expect = 2e-74 Identities = 560/813 (69%), Gaps = 26/813 (3%) Strand=Plus/Plus Query 988 GCTATGTTTATGCCCTAAGTCACGTTAGACACCCCTAAAAAACCACCCTGCCAGGTGGTT 1047 ||||||||||||||||| || |||||||||| ||| ||||||||||||| | ||||||| Sbjct 874 GCTATGTTTATGCCCTAGGTAACGTTAGACATCCC-AAAAAACCACCCTTGCCGGTGGTT 932 Query 1048 GAGATGGAACG-TAGGCATGAACAGAACCGAAATCCCCCGCGACAACAACGTCCGCTGGG 1106 || | ||| |||||||||||| |||||||||||| | ||| | | | || |||| Sbjct 933 ATGAATGGACGCTAGGCATGAACAAAACCGAAATCCCGCTTGACCCAACCCTGCGATGGG 992 Query 1107 AGTGGATCAAATACCAGCTCCGCGCCAGGGGGTCGTCCCTGGCCGAGGTGGCCCGCTCCC 1166 | |||||||||||||| || || || | || |||| || || |||| || | Sbjct 993 AATGGATCAAATACCAACTTCGTACCCGAGGTACGTCACTCGCAATCTTGGCGCGTGAAC 1052 Query 1167 TCGACGTATCCAGCC-CGGCAGTCAAAAACGCCAAGCTGAACCCCTACCCTCGGGTAGAG 1225 | ||||| | ||| | || ||||| ||||| |||| | | | || || || | ||| Sbjct 1053 TTGACGT-TACAGATGCTGCCGTCAAGAACGCTAAGCGCACCGCATATCCGCGAATGGAG 1111 Query 1226 CGCGCCATCGCTGCTGTGCTCGACCTCAGCCCCCTAGTGCTGTGGCCTGAGCGCTGGCTC 1285 || || || || || ||| | ||||| || | | ||||||| || || ||| | Sbjct 1112 CGAGCTATTGCCCGTGCGCTAGGCCTCAAGCCAATCGACTTGTGGCCCGAACGTTGGAAC 1171 Query 1286 GACGACGAGAATCCGAAGCGGCAACGGCCCAATCGCTCGGAGACCTTGCAGG-CATATGT 1344 | ||| | | || | || || | ||| | || | |||| || | Sbjct 1172 GCAAACG-GCACCCCA-----CACCGT---ATTCGGGTGCAGCGC--GCAGAACACAACG 1220 Query 1345 CAGACATAT-GCCAGGTGCTGAGGAAAATACCAGATACGCTGACCAAGCGCAGCGTAAAG 1403 || || | | |||| | || | | |||| | || || || |||||| Sbjct 1221 CA-ACTTCTAGCCAAGAGC------ATAACCCAGCTTA--TGCCCTTCGACACCGTAAAA 1271 Query 1404 CCGACGCGGGGGCTTGAACATGACCCGCCGCAAAGACGACCGCACCCTGGACATCTTCGA 1463 ||| | ||| || | |||||| ||| || || || || || | ||||||||| Sbjct 1272 CCGGCACGGAGGTATAAACATGCGCCGTGTAAAGGATGATCGTACGTTAGACATCTTCTC 1331 Query 1464 TGTTCCGCAGCCAGCCCGCGCTATACCCGGCGAGTGCAACTATGCCGCCCAGGTCAGCGA 1523 ||| || ||||||| | ||||| || || | ||||| ||||||| |||||||| || Sbjct 1332 TGTCCCACAGCCAGTTCTGGCTATCCCAGGGAATGGCAACAATGCCGCACAGGTCAGTGA 1391 Query 1524 GCTGGTCAGCGAAATTCTGAAGGCCGCCAACCTCGACCGTTACGAGATTGCCGCCCGCAT 1583 ||| ||||||| |||||||| | || | || ||||||||||| |||| || ||||| Sbjct 1392 ACTGATCAGCGAGATTCTGAAAGGTTCCGATCTGGACCGTTACGAAATTGGTGCACGCAT 1451 Query 1584 GTCGCGCCTCTCCGGCGATGACGTGAGCAAGAACATGCTCGACGCCTGGTCGAGTCCCGC 1643 ||| ||| | || |||||||||||||| ||| ||||||| ||||| |||||||| || || Sbjct 1452 GTCTCGCTTGTCTGGCGATGACGTGAGTAAGCACATGCTTGACGCGTGGTCGAGCCCAGC 1511 Query 1644 CCGAGTTGATCACAACTTGCCTTTCTACCGCGCCGCCCTCCTGGAGGACGTCTGTGCGAG 1703 |||| || || ||| |||| ||||| | ||| | || || || || || ||| || Sbjct 1512 CCGAACAGACCATAACCTGCCGTTCTATAGAGCCCCACTGCTTGAAGAAGTTTGTAGCAG 1571 Query 1704 CCACCTGCTGACCAACTGGCTGGTCGATGTGCGTGGCGGCCGCGTGGCCTATGGCCGAGA 1763 ||| | | ||| |||||||||| || ||||| ||||||||||| || || || || Sbjct 1572 TCACGTTTTAACCGACTGGCTGGTTGAGCAACGTGGTGGCCGCGTGGCTTACGGTCGCGA 1631 Query 1764 CGCACTGCTCGCCGAACTGGGCCGCCTGGAGCG 1796 ||||| ||| || || || || |||| ||| Sbjct 1632 TGCACTCAACGCGGAGCTTGGTCGTCTGGCGCG 1664 Score = 95.1 bits (104), Expect = 3e-15 Identities = 278/418 (67%), Gaps = 8/418 (2%) Strand=Plus/Plus Query 177 ATCCATCGCCCAAGCCAGACAACGCGCCCAATGATATCCAAGTCAGAAAGCTGGTCCTTG 236 ||||| | ||| ||| || ||||| ||||| || |||| ||| | || ||| || Sbjct 56 ATCCAACCGCCAGCCCATACTACGCGGCCAATTATCTCCAGGTCGTTCAACTTATCCCTG 115 Query 237 GGGACGACCATGTCCTTATACGCCTTGTTTTCGCTGATGATCGCGATAGAGCCATCGAAC 296 ||||| ||||| || || |||||||| || |||||||| ||||| || |||||| Sbjct 116 GGGACAACCATATCGCGGTAGGCCTTGTTCTCACTGATGATGTGAATAGACCCGTCGAAC 175 Query 297 TGCCGTTGTAAGCGCTTGGCGTAGAGCTGATCCCCGACCCGAATCACATAGATCGCTTCA 356 ||||| || | | || || ||||| || || | | ||| || || || | || || Sbjct 176 TGCCGCTGGAGCCTTTTCGCATAGAGATGGTCATCCAGCCGGATGACGTATACAGCCTC- 234 Query 357 TCCCGCACG-GTTCTAAGGTCATGGTCGATAACAACGGCGTCGCCATCCGACAGGAGGGG 415 |||| || | | || || ||||| || | || | |||||||| || || Sbjct 235 TCCCTCAAGCGAGCTGCGGCTGTGGTCAATCATCACAGTATCGCCATCGCTTAGAAGTCC 294 Query 416 TTCCATGGAGTCGCCCCCGACCCTTACTGCCGACATCCTGGTTGGCTCTAACCCCTTCTT 475 ||||| || || || | || | | ||| |||| | | | || | || | ||| Sbjct 295 CTCCATCGAATCCCCGTCCACTCGGATTGCGGACAGTCGCGCAGAGTCCAGGCCTTGCTT 354 Query 476 GCTCAAGC-TGTA-GCGCGTAAAGGCAAGCTGCGTAAGAACGTGTGCGCCTTCGCTCCAG 533 || |||| ||| ||| || || |||||||| || || || || |||||||||||| Sbjct 355 GC-GAAGCGAGTACGCG-GTGAACGCAAGCTGGGTTAGGACAGTAGCCCCTTCGCTCCAG 412 Query 534 CTTCCATGTCCCGCGCTGACCCT-CGCGTCATACAGGGGGACGTAGACGTATTGGTCC 590 || |||||||| || || | ||||| |||| || ||||| |||| | |||| Sbjct 413 GCGCCGTGTCCCGCACT-ACAGTGGGCGTCGTACAAAGGCACGTAAGCGTACTTGTCC 469 >seq8746 Length=2069 Score = 122 bits (134), Expect = 2e-23 Identities = 132/173 (76%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 8290 ACGGCCAAGAACCGCA--CCGTCCACTGAGCGAAACCGCCCCGGCCTGGCCGGGACGGTC 8347 ||||||| |||| | || | || | ||||||| ||||||||| | | ||| ||||| Sbjct 1773 ACGGCCAGGAACAACTTGCCCTGCATTAAGCGAAATCGCCCCGGCGCG-CTGGGGCGGTC 1715 Query 8348 TGCCGGACGTGGTGGTCCGGTACTGATGAGCAGCCACCCATGACGAACGAAACTAAGACG 8407 ||||||||||||| |||||||||||||||||||||||||||||| ||||||| | Sbjct 1714 TGCCGGACGTGGTTGTCCGGTACTGATGAGCAGCCACCCATGACAGACGAAACACCCAAA 1655 Query 8408 GACCGCCAGCGCCGCCTGGCGCGAGAACGCCAACGGGCGAAGCGCGAGCGCGA 8460 | ||| | ||||||||| | || || |||| || ||||| ||||||| Sbjct 1654 CAGCGCAAAACCCGCCTGGCATGCGAGCGTAAACGTGCCCAGCGCAAGCGCGA 1602 Score = 80.6 bits (88), Expect = 6e-11 Identities = 106/147 (72%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 8707 AAAATCCACATCGCCAAGACCCAGCTCGGCATGGACGATGACACCTATCGCGCATTGCTC 8766 || |||||||||||||||| | || || |||| || || ||||| || || ||| | Sbjct 1373 AAGATCCACATCGCCAAGAAGGACCTTGGGCTGGATGACGAAACCTACCGGGCCTTGTTG 1314 Query 8767 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACTTAGGGCCGCGCCAGGTCGATCAGGTG 8826 | ||||| ||||| ||||| |||||||| ||| | ||| |||||| ||| || Sbjct 1313 GGCCGCGTGGCGGGTGTGCGTTCGGCCAAAGACCTGACGCCACGCCAGATCGGCGCTGTA 1254 Query 8827 CTGGTCGAACTCCAGCGCTTGGGCTGG 8853 |||| ||| | |||||||||||| Sbjct 1253 CTGGCCGAGTTTGCCCGCTTGGGCTGG 1227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116348187519754