Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_009821.1 Length=164270 Score E Sequences producing significant alignments: (Bits) Value seq2516 167 2e-36 seq3869 159 4e-34 seq2261 104 2e-17 >seq2516 Length=21774 Score = 167 bits (184), Expect = 2e-36 Identities = 143/177 (81%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 53327 TTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTATTGAAGCG 53386 ||||||||||||||| ||||| ||||| |||||||| || || |||||| |||||||| Sbjct 1952 TTCGGTAAAGGTACGGGCGATTACGTCGCGCTGCTGTTCCGGCGTCAGAGAGTTGAAGCG 1893 Query 53387 CACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGC 53446 |||||||| || ||||| ||||| || |||||||| || || || ||||| ||||| || Sbjct 1892 TACCGCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATGCTCAACCGC 1833 Query 53447 GTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGACCACCTTCGAC 53503 |||||||| |||| || || |||||||| |||| |||||||| |||||||| Sbjct 1832 GTCCAGCAGGGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTCGAC 1776 >seq3869 Length=8584 Score = 159 bits (176), Expect = 4e-34 Identities = 289/421 (69%), Gaps = 4/421 (1%) Strand=Plus/Plus Query 135792 CATCAGGTTATTAATCTGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACCCC 135851 |||||| || || |||||||| |||||||| | || |||| |||||| | || || Sbjct 4353 CATCAGCTTGTTGATCTGTACCCCGTAGTCCATGTGACGAACGCGGTTGGCGTCGGTACC 4412 Query 135852 CTTATTGTTCTTTAACACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAG 135911 ||||| || | ||| | ||| ||||| | || | ||||||||||||||| |||| Sbjct 4413 ACGGTTGTTTTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAAGAG 4472 Query 135912 AGTCGCCGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATG 135971 || ||||| ||||| || | ||||| || ||||| || || || || ||||| ||||| Sbjct 4473 GGTTGCCGCGCCGCCGCGCACGCCGCCCTGCGAGCAGGATTTCACCGCGGTCTGGAAATG 4532 Query 135972 TTTCCAGAATGGGATAACGCCAGTATGACGAA--CTTCACCATGCCCGATCTTAGATCCT 136029 || |||| || || ||| || || ||| |||| || | |||| || Sbjct 4533 CTTGTAGAACGGAATGCAGCCGGTGTG--GAAGGCTTCGCCGCCGCGGATCGGGCTGCCC 4590 Query 136030 TCCGCGCGAATCATGCCAGCGTTGATACCGATACCAGCACGCTTGCTAATATACTTGATG 136089 ||||||||| || |||||||| ||||| || || |||| | || || || | Sbjct 4591 AGCGCGCGAATGCGCCCGGCGTTGATGCCGATGCCGGCGCGCTGGGAAACGTATTTCACA 4650 Query 136090 ATTGCATTTGCTGTTTCGTTGATGCCCTGCAATGAGTCATCACTTTCAATCACCACACAC 136149 || || | | || |||||||| | || ||| | | || |||| ||| || Sbjct 4651 ATCGCGCTGGAGGTGGCGTTGATGGAATCCAGGCTGTCGCCGCACTCGATCAGCACGCAG 4710 Query 136150 GAACTAAATTGGCGTGTTGGGGTACGCACACCTGCCATAATCGGAGTAGGCAGAGAGATT 136209 || || || || || |||||||||||||| || | ||| ||||| || ||||| |||||| Sbjct 4711 GAGCTGAACTGACGGGTTGGGGTACGCACGCCGGACATGATCGGCGTCGGCAGCGAGATT 4770 Query 136210 T 136210 | Sbjct 4771 T 4771 >seq2261 Length=3986 Score = 104 bits (114), Expect = 2e-17 Identities = 126/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 53331 GTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTATTGAAGCGCACC 53390 || |||||||| | ||||| || ||||||| ||| ||||| || || || || Sbjct 674 GTGAAGGTACGGGTAATAACATCCTGCTGCTGTTCTTTGGTCAGGGAGTTAAAACGTACG 615 Query 53391 GCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGCGTCC 53450 ||||| ||||| || || || || |||||||| || || || || | ||| | ||||| Sbjct 614 GCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTCCGGGTTTTCCATCGCGTCG 555 Query 53451 AGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGACCACCTTCGA 53502 |||| |||||| || || ||||| || |||| |||||||||||||||| Sbjct 554 AGCAGCATTTCGCGGTTCATGACGTTCACGTTCAGGTGCTGACCACCTTCGA 503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 525350571191600