Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq43 181 2e-40 seq3382 131 4e-25 seq3381 125 2e-23 seq4240 122 2e-22 seq1351 111 4e-19 seq3843 89.7 1e-12 seq19 84.2 5e-11 >seq43 Length=202503 Score = 181 bits (200), Expect = 2e-40 Identities = 341/500 (68%), Gaps = 6/500 (1%) Strand=Plus/Minus Query 167024 ATTCGTTGGCATCACCGAGACGAAATTACATCCATATTGTTTTCTGTAAGCATCACACAT 167083 ||| |||||||| || |||| ||||||||| || || || ||||| || |||||||| Sbjct 35956 ATTGGTTGGCATGACGGAGATGAAATTACAACCGTACTGGGCCCTGTAGGCGTCACACAT 35897 Query 167084 CTCGATTCCGGCGATTTTCGCTATCGCGTATGGTTTGTTAGTGGGTTCGAGAAATCCTGT 167143 | || ||||| ||||| || || || || |||| || || ||| || || || || Sbjct 35896 TTTAATACCGGCAATTTTTGCAATGGCATAGGGTTCATTGGTTTCTTCCAGCAAGCCAGT 35837 Query 167144 CATCAGATATTCTTCCTTGATAGGATTTTGAGCTTCTTTTGGGTAAATGCAACTGCTACC 167203 | || ||||||||||| | || | | | ||| || |||||||| |||||| ||| Sbjct 35836 AAGAAGGTATTCTTCCTTCAGGGGCTGTGGGGCTAACTTCGGGTAAATACAACTGGAACC 35777 Query 167204 GAGAAACACGAGTTTTTTCACTCCGAACATTTT---GGACGCATGAATGACATTCGTCTG 167260 || |||| | ||||| | ||| |||| ||| |||| || ||||| |||| Sbjct 35776 CAGGAACATTAACTTTTTGATGCCG---TTTTTCCATGACTCATGGATCACATTGTTCTG 35720 Query 167261 AATCATCAGATTATCGTGAATAAAATCGCCCCCGAAGGAGTTGTTCGCGTGAATACCTCC 167320 ||| ||||| |||| || |||||| ||| | ||| |||||| || ||| || || Sbjct 35719 AATAGCAAGATTTTCGTAAAGAAAATCTGCCCTGTAGGTGTTGTTGGCAATAATTCCGCC 35660 Query 167321 TACTTTTGCAGCCGCGAGAAATACGTATTCTGGTAGTTCGATCTCGAAAAACGCGTTCAC 167380 ||||| || || ||||||||||| || || ||| ||| | || || || | | || Sbjct 35659 CACTTTGGCCGCAGCGAGAAATACATACTCCGGTTTTTCCTTTTCAAAGAAATCACTTAC 35600 Query 167381 TTCTCGTTGGTTTGTCAGGTCGAGATCTTTTGACGTTCGAGTGACGATGTTCATATATCC 167440 | | |||| || ||||| || | ||| || || || | | || || | || Sbjct 35599 TGCCTGTTGATTGCGGAGGTCCAGCTGGGCTGATGTCCGGGTCAAAAGATTATTAAAACC 35540 Query 167441 TTCTTTTTGCAAGAGTCTCATAAGAGCGCTTCCGACCATTCCTGTGTGACCTGCCACGTA 167500 ||||||||||| || || || || |||||||| |||||| || || || Sbjct 35539 TTCTTTTTGCAGTTTTCGGTAAATCGCAGAACCCACCATTCCACGGTGACCGGCAACATA 35480 Query 167501 TATCTTCGAGTGTTTTTCCA 167520 ||| || ||||||||||||| Sbjct 35479 TATTTTTGAGTGTTTTTCCA 35460 >seq3382 Length=4522 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || || | |||| ||| || |||||||| || ||||| | | Sbjct 4179 CCTCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAG 4120 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || || || ||||| || ||||| |||||||| || |||| Sbjct 4119 AGGGTACGACCGTCCTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGG 4060 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || || || ||||| || || || ||||| || || | |||| || || Sbjct 4059 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAACCCTCAACC 4000 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 || || ||||| ||||| |||||||||||||||||||| || ||||| || Sbjct 3999 TCAAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAAATTTGCATGAT 3950 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| ||||| | ||| || || || || || || || ||||| || ||| Sbjct 4371 TCCTTCTGGATATTGTAGTCAGAGAGGGTACGACCATCCTCCAACTGCTTTCCGGCAAAG 4312 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||| || || ||| ||||| || || |||||||| || || || |||||| Sbjct 4311 ATGAGACGTTGCTGGTCGGGTGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTT 4252 Query 288403 TCTATAGAATCGCTCGAT---TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | ||| ||| || || ||||| ||||| ||||| || || || |||||| Sbjct 4251 TCAATGGTGTCG---GATCCCTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTG 4195 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 4194 ACGAAGATCTGCAT 4181 >seq3381 Length=12314 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || |||||||| || || | || | || ||| |||||||| || |||||| | Sbjct 1641 CCTCCACGGAGTCTGAGAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGCCA 1582 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || || ||||||| |||||| || |||| Sbjct 1581 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCGGGTGGG 1522 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||| ||||| || || || ||||| || || | ||| ||| || Sbjct 1521 ATACCCTCCTTATCTTGGATCTTTGCCTTTACGTTCTCAATGGTATCAGAGCCTTCAACC 1462 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || || |||||||||||||| |||||||| Sbjct 1461 TCGAGAGTGATAGTCTTACCAGTAAGAGTCTTGACGAAGATCTGCAT 1415 Score = 123 bits (136), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||||||| || | |||| ||| ||||| ||||| || ||||| || Sbjct 1185 CCACCACGGAGTCTAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCACCG 1126 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| ||||| ||||| || || || |||||||| || ||| Sbjct 1125 AGGGTACGACCATCTTCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCGGGTGGA 1066 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA---TTCT 288423 || ||||| || || || || || || || || || || || | || ||| || Sbjct 1065 ATACCTTCCTTGTCTTGAATCTTAGCCTTGACATTCTCAATGGTGTC---CGAGCCCTCA 1009 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||||||||| || || ||||||||||| || |||||||| Sbjct 1008 ACCTCAAGAGTGATCGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 959 >seq4240 Length=2116 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || || | |||| ||| || || || ||||| ||||| | | Sbjct 1669 CCTCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCAGAG 1610 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || ||||| || ||||| |||||||| || |||| Sbjct 1609 AGAGTGCGACCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGG 1550 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || || |||||||| || || || ||||| || || | || ||| || Sbjct 1549 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCTTCGACC 1490 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || |||| |||||||||||| |||||||| Sbjct 1489 TCAAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 1443 >seq1351 Length=12664 Score = 111 bits (122), Expect = 4e-19 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||| || | |||| ||| || ||||| || || ||||| || Sbjct 4702 CCTCCACGGAGACGAAGAACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCG 4643 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || |||||||| || || | ||| || || || ||||||| ||| || || |||| Sbjct 4642 AGGGTGCGTCCATCCTCAAGTTGCTTGCCGGCAAAGATCAAACGTTGCTGGTCGGGTGGG 4583 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT---TCT 288423 || || || || |||||||| || || ||||| || || | ||| ||| || Sbjct 4582 ATACCCTCCTTGTCCTGGATCTTGNNCTTGACGTTCTCGATGGTGTCG---GATCCCTCG 4526 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| || || || ||||||||||| |||||||| Sbjct 4525 ACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 4476 Score = 105 bits (116), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || ||||| | ||| | |||| ||| || ||||| || ||||||||| | Sbjct 5158 CCTCCACGAAGTCTCAATACCAAGTGAAGGGTGGACTCCTTTTGAATGTTATAGTCGCCA 5099 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || || ||||| |||||||| || |||| Sbjct 5098 AGAGTGCGACCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGG 5039 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 ||||| || || || || || || || || ||||| || || | || || | || Sbjct 5038 ATTCCCTCCTTGTCTTGAATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCC---TCA 4982 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || || || ||||||||||| |||||||| Sbjct 4981 ACCTCAAGTGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 4932 >seq3843 Length=4024 Score = 89.7 bits (98), Expect = 1e-12 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 72680 TCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAAT 72739 ||||||||| | ||||||| | |||||||| | || ||||| ||||| || ||||| Sbjct 3519 TCTCGGTAACTTGAATGCCAAGCGTGATTGGGGTCACGCCAAGGACTACGTCGAGGCAAT 3578 Query 72740 GTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGG-GAAAACAA 72798 |||||||||||| || ||||| | || || |||| ||| ||||| || || || | | Sbjct 3579 GTGGTTGATGCTCCAGCAAGAGAAGCCAGACGACTTTGTCATTGCTACTGGTGAGACTCA 3638 Query 72799 CGAGCGTTCGTGAGTT 72814 | | ||||||||||| Sbjct 3639 CTCG-GTTCGTGAGTT 3653 >seq19 Length=770976 Score = 84.2 bits (92), Expect = 5e-11 Identities = 123/170 (72%), Gaps = 8/170 (5%) Strand=Plus/Plus Query 52877 GAGAAATTTTACTTTACACCGAGTAGCAATCCG-TATGAAGTTTTTGAAACGAAATATGG 52935 ||||||||||| ||||| || || | | | ||| |||| ||| |||| || |||| Sbjct 367801 GAGAAATTTTATTTTACCCC-AGGCGATTTAGGCTATAAAGTATTTAAAACCAAGTATGC 367859 Query 52936 AAAACTAGGCGTGCTGATTTGCTGGGATCAGTGGTTCTCTGAAGCAGCGAAATGTCTG-- 52993 ||| | || ||||||||||||||||| ||||||| | |||||||| | | ||| Sbjct 367860 CAAAATTGGTGTGCTGATTTGCTGGGACCAGTGGTATCCCGAAGCAGC---ACGGCTGAC 367916 Query 52994 -GCTCTAGAAGGCGCTGATTTTATTGTATACCCCACCGCCATCGGCTCGG 53042 || || || || |||||| | || ||||| ||||| ||||||| || Sbjct 367917 CGCGCTGATGGGTGCAGATTTTCTGGTTTACCCGACCGCAATCGGCTGGG 367966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179227768032906