Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq43 187 5e-42 seq1043 96.9 8e-15 seq3843 89.7 1e-12 >seq43 Length=202503 Score = 187 bits (206), Expect = 5e-42 Identities = 344/503 (68%), Gaps = 6/503 (1%) Strand=Plus/Minus Query 149168 ATTCGTCGGCATGACTGAGACGAAATTACATCCATATTGTTTTCTGTAAGCATCACACAT 149227 ||| || |||||||| |||| ||||||||| || || || ||||| || |||||||| Sbjct 35956 ATTGGTTGGCATGACGGAGATGAAATTACAACCGTACTGGGCCCTGTAGGCGTCACACAT 35897 Query 149228 CTCGATTCCGGCGATTTTCGCTATCGCGTATGGTTTGTTAGTGGGTTCGAGAAATCCTGT 149287 | || ||||| ||||| || || || || |||| || || ||| || || || || Sbjct 35896 TTTAATACCGGCAATTTTTGCAATGGCATAGGGTTCATTGGTTTCTTCCAGCAAGCCAGT 35837 Query 149288 CATCAGATATTCTTCCTTGATAGGATTTTGAGCTTCTTTTGGGTAAATGCAACTGCTACC 149347 | || ||||||||||| | || | | | ||| || |||||||| |||||| ||| Sbjct 35836 AAGAAGGTATTCTTCCTTCAGGGGCTGTGGGGCTAACTTCGGGTAAATACAACTGGAACC 35777 Query 149348 GAGAAACACGAGTTTTTTCACTCCGAACATTTT---GGACGCATGAATGACATTCGTCTG 149404 || |||| | ||||| | ||| |||| ||| |||| || ||||| |||| Sbjct 35776 CAGGAACATTAACTTTTTGATGCCG---TTTTTCCATGACTCATGGATCACATTGTTCTG 35720 Query 149405 AATCATCAGATTATCGTGAATAAAATCGCCCCCGAAGGAGTTGTTCGCGTGAATACCTCC 149464 ||| ||||| |||| || |||||| ||| | ||| |||||| || ||| || || Sbjct 35719 AATAGCAAGATTTTCGTAAAGAAAATCTGCCCTGTAGGTGTTGTTGGCAATAATTCCGCC 35660 Query 149465 TACTTTTGCAGCCGCGAGAAATACGTATTCTGGTAGTTCGATCTCGAAAAACGCGTTCAC 149524 ||||| || || ||||||||||| || || ||| ||| | || || || | | || Sbjct 35659 CACTTTGGCCGCAGCGAGAAATACATACTCCGGTTTTTCCTTTTCAAAGAAATCACTTAC 35600 Query 149525 TTCTCGTTGGTTTGTCAGGTCGAGATCTTTTGACGTTCGAGTGACGATGTTCATATATCC 149584 | | |||| || ||||| || | ||| || || || | | || || | || Sbjct 35599 TGCCTGTTGATTGCGGAGGTCCAGCTGGGCTGATGTCCGGGTCAAAAGATTATTAAAACC 35540 Query 149585 TTCTTTTTGCAAGAGTCTCATAAGAGCGCTTCCGACCATTCCTGTGTGACCTGCCACATA 149644 ||||||||||| || || || || |||||||| |||||| || ||||| Sbjct 35539 TTCTTTTTGCAGTTTTCGGTAAATCGCAGAACCCACCATTCCACGGTGACCGGCAACATA 35480 Query 149645 TATCTTCGAGTGTTTTTCCATTG 149667 ||| || ||||||||||||| || Sbjct 35479 TATTTTTGAGTGTTTTTCCAATG 35457 >seq1043 Length=1979 Score = 96.9 bits (106), Expect = 8e-15 Identities = 365/561 (65%), Gaps = 14/561 (2%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 ||||| ||| || | ||||| || ||| | ||||| |||||||||| |||| | || ||| Sbjct 790 TTCCCTATCAAGCACCCGGACATTTGGAACATGTACAAGAAGGCAGAGGCATCTTTCTGG 731 Query 242935 ACCACCGAGGAAGTTCCTCTGA-ACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGA 242993 || |||| || | |||| | || ||| | ||| ||| | || || || || Sbjct 730 ACAGCCGAAGAGATCGATCTGGCAAGC-GACATTCACGATTGGGAGAACAAGCTGAACGA 672 Query 242994 CGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 243053 |||| ||||| || |||| ||| | || | || || || | || || || ||||| Sbjct 671 TAACGAGCGTCACTTTATCACTCACGTACTGGCCTTCTTTGCCGCATCGGACGGCATTGT 612 Query 243054 GATGGAAAATCTGCAGACCAACTTTAGTGTG-GAAGTAACGGTTCCAGAGGCACGGCAAT 243112 | || ||||| || ||| | ||| || || | | ||||||||||| | Sbjct 611 CAACGAGAATCTTGCCACACGCTTCA-TGTCTGAGGTGCAGATCCCAGAGGCACGTTGTT 553 Query 243113 TTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCG 243172 | |||| | ||||| || ||| ||||| ||||| || |||||| |||| Sbjct 552 TCTATGGATTCCAAATCGCCATCGAGAACATCCACTCTGAGACCTACAGTCTTCTCATCG 493 Query 243173 ACGCGCTTATTTCAGATGAACAAGAGCGA-AACGAGCTTTTCGACGCCATCGAAAACATT 243231 || | || | ||| | | ||| | ||| ||| ||| |||||||||| | || Sbjct 492 ACAC-CTACATCAAGAACACCGAGAAGAAGAACATGCTCTTCCACGCCATCGAGACTATC 434 Query 243232 CCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACC--CGGTAAATCAT 243289 || || ||| | || || || | ||||| | ||| | ||| || | |||| Sbjct 433 CCCGCCGTTAAGAAGAAAGCCGACTGGGCCTTGCGCTGGATC--ACCAACGCTCGCTCAT 376 Query 243290 TTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCT 243349 | || |||||| | ||||||| | || || ||||| | ||| || ||||||| Sbjct 375 TCGCCGAGCGTTTGGTCGCCTTTGCCGCTGTCGAGGGTATCTTCTTTAGTGGCAGTTTCT 316 Query 243350 GCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTC--TGTCTAACGA 243407 || | ||||||||||| ||| ||| | |||| ||| | ||| | || ||||| Sbjct 315 GCTCGATCTTTTGGCTCAAGAAGCGCGGTTTAATGCACGGCTT--GTCGTTCTCGAACGA 258 Query 243408 GTTCATCAGTCGCGACGAGGG 243428 | | |||||||| |||||||| Sbjct 257 GCTGATCAGTCGTGACGAGGG 237 >seq3843 Length=4024 Score = 89.7 bits (98), Expect = 1e-12 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 68669 TCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAAT 68728 ||||||||| | ||||||| | |||||||| | || ||||| ||||| || ||||| Sbjct 3519 TCTCGGTAACTTGAATGCCAAGCGTGATTGGGGTCACGCCAAGGACTACGTCGAGGCAAT 3578 Query 68729 GTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGG-GAAAACAA 68787 |||||||||||| || ||||| | || || |||| ||| ||||| || || || | | Sbjct 3579 GTGGTTGATGCTCCAGCAAGAGAAGCCAGACGACTTTGTCATTGCTACTGGTGAGACTCA 3638 Query 68788 CGAGCGTTCGTGAGTT 68803 | | ||||||||||| Sbjct 3639 CTCG-GTTCGTGAGTT 3653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102481134142450