Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1351 125 8e-24 seq4240 118 1e-21 seq3382 100 3e-16 seq13839 95.1 1e-14 seq8653 84.2 2e-11 >seq1351 Length=12664 Score = 125 bits (138), Expect = 8e-24 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | ||| | |||||| || | ||| |||||||||||| ||||| ||| | Sbjct 4931 ACCTCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACC 4872 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| || || || ||||| ||||||||||||| ||| Sbjct 4871 GAGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGG 4812 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT---TC 42157 | | ||||||||| ||| || |||| || | | |||||| ||| || Sbjct 4811 AATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCG---GATCCCTC 4755 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | |||||||| || || ||||| ||||| |||||||||||||| Sbjct 4754 GACCTCCAGAGTGATGGTCTTTCCAGTTAGAGTCTTCACAAAGATTTGCAT 4704 Score = 104 bits (114), Expect = 3e-17 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | ||| | ||||| || | ||| |||||||||||| ||||| ||| | Sbjct 4703 ACCTCCACGGAGACGAAGAACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACC 4644 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || || ||||| || || || || | || |||||||||| ||| Sbjct 4643 GAGGGTGCGTCCATCCTCAAGTTGCTTGCCGGCAAAGATCAAACGTTGCTGGTCGGGTGG 4584 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT---TC 42157 | | |||||||||| ||| || |||| || | | |||||| ||| || Sbjct 4583 GATACCCTCCTTGTCCTGGATCTTGNNCTTGACGTTCTCGATGGTGTCG---GATCCCTC 4527 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||| |||||||| ||||| || || ||||| || ||||| ||||| Sbjct 4526 GACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 4476 Score = 102 bits (112), Expect = 9e-17 Identities = 155/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 ||| ||||| || | ||| |||||||||||| || || || | ||||| || | || Sbjct 5144 CAATACCAAGTGAAGGGTGGACTCCTTTTGAATGTTATAGTCGCCAAGAGTGCGACCATC 5085 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 || |||||||| || || || ||||| ||||||||||||| ||| | | |||||||| Sbjct 5084 CTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTGT- 5026 Query 42116 CATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGA 42171 | ||| | || | |||| || | | ||||| || | || || || | |||| Sbjct 5025 CTTGAATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCC---TCAACCTCAAGTGTGA 4969 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||| || || ||||| || ||||| ||||| Sbjct 4968 TGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 4932 >seq4240 Length=2116 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | ||| | |||||| || | ||| |||||| ||||||||||| |||| Sbjct 1670 ACCTCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCAGA 1611 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || |||| || |||||||| || || || ||||| ||||||||||||| ||| Sbjct 1610 GAGAGTGCGACCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGG 1551 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||||||| ||| || |||| || | | ||||| ||| || Sbjct 1550 GATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCTTCGAC 1491 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| || || || | ||||| || ||||| ||||| Sbjct 1490 CTCAAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 1443 >seq3382 Length=4522 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | ||| | |||||| || | ||| ||||||||| || ||||| |||| Sbjct 4180 ACCTCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGA 4121 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || |||| || | |||||| || || || ||||| ||||||||||||| ||| Sbjct 4120 GAGGGTACGACCGTCCTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGG 4061 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||||||| ||| || |||| || | | || ||| || || Sbjct 4060 GATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAACCCTCAAC 4001 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| || || || || ||||| || || |||||||| Sbjct 4000 CTCAAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAAATTTGCAT 3953 >seq13839 Length=228 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | ||| | |||||| || | ||| |||||||||||| ||||| ||| | Sbjct 157 ACCTCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACC 98 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| || || || ||||| ||||||||||||| ||| Sbjct 97 GAGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGG 38 Query 42101 CACGCTCTCCTTGTC 42115 | | ||||||||| Sbjct 37 GATTCCCTCCTTGTC 23 >seq8653 Length=1535 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||||| |||||| || | || |||||| ||||| ||||| || | Sbjct 194 CCTCCACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGCCG 253 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || |||| || || ||||| || || || || | || || || |||| ||| Sbjct 254 AGAGTGCGACCGTCTTCAAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCGGGTGGG 313 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | | || ||||| ||| | |||| |||| || | | ||||| || | || Sbjct 314 ATACCTTCTTTGTCT-TGAATCTTTGCCTTGACGTTCTCGATAGTGTCAGAGCCC---TC 369 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || | |||||||| || || || | ||||||||||||||||||||| Sbjct 370 GACCTCTAGTGTGATGGTCTTTCCAGTCAATGTCTTTACAAAGATTTGCATT 421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543021134153680