Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_010495.1 Length=45051 Score E Sequences producing significant alignments: (Bits) Value seq4 172 2e-38 seq360 136 1e-27 seq4750 107 6e-19 seq97 87.8 5e-13 >seq4 Length=38681 Score = 172 bits (190), Expect = 2e-38 Identities = 201/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 6642 TGACGCACAGCAAAGGATTGATGCTGCGCGCCATGATGCTGTTAATGCTGCTGCTAAGTC 6701 ||| || ||||| ||||| || |||||| |||||||| || ||||||| ||| | Sbjct 4725 TGAAGCGCAGCAGAGGATCGACCAGGCGCGCAATGATGCTCTTGATGCTGCCGCTCGCGC 4666 Query 6702 TGGCAGGTTGCAACAGCAACTCGCAAACATCCGCAAGCAGCTC-GTCGGATATTCCACCG 6760 |||| ||||||| || || |||| |||||| |||||||| | | | ||| | || Sbjct 4665 TGGCCGGTTGCAGCAACAGCTCGTTGCCATCCGTGAGCAGCTCAGGCAG-TATAACGCCA 4607 Query 6761 CTGAGTCCATTGGCAATCCAGCCGCAGAAACCGGAGTTTTGCTTGGAGACGTGCTCAGCA 6820 || || ||| |||||||||| |||||||||||||||| ||||||||||||| Sbjct 4606 CTATCGGCACTGGGGCGTCAGCCGCAGACACCGGAGTTTTGCTTGCCGACGTGCTCAGCA 4547 Query 6821 AATCTGTCGAAAGAAATCGACAACTGGCAGATTACGCTGACAGGGCAAGAGAGGCGGGAT 6880 ||||| |||| |||| |||||||||||||| ||||||||| |||| || || ||| Sbjct 4546 AATCTCTCGAGCGAAACCGACAACTGGCAGAGTACGCTGACCGGGCCGCCGAAGCCGGAC 4487 Query 6881 TAGCATGTGAGGCGCAGTACAATTCGCTG 6909 || ||||| ||||||| |||||||| Sbjct 4486 GAGTCTGTGAAAAGCAGTACGATTCGCTG 4458 Score = 87.8 bits (96), Expect = 5e-13 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 43192 GATATCAAAACCCCGGCCACTGATGCTTTCCTGGCTGAAGTGCGGGCGCATGGCGTGGAG 43251 |||||| |||||||||| || || |||||||||||||||||||||||||| || |||||| Sbjct 33963 GATATCGAAACCCCGGCGACAGACGCTTTCCTGGCTGAAGTGCGGGCGCAGGGTGTGGAG 33904 Query 43252 ATG 43254 ||| Sbjct 33903 ATG 33901 >seq360 Length=29890 Score = 136 bits (150), Expect = 1e-27 Identities = 163/221 (74%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 32827 CCGCCAAGCATCTGCATGACGCCACCCATTTGTGGAATGACAATCTCAGTGGTGTATTTG 32886 ||||| |||||||||||| ||| |||| | | || | || |||||||||||| Sbjct 27240 CCGCCCAGCATCTGCATGGTGCCGCCCACGTTC---ACCACCACTTCGGTGGTGTATTTG 27296 Query 32887 TCCACGCCGCTGCTGTCAGTCCACTTACGAGTGCGAAGTTGTCCTTCTATATAAACCTGC 32946 ||| ||| || |||||||| || || || || || ||||| || || ||||| Sbjct 27297 TCCTGACCGGATTGATCGGTCCACTTGCGGGTACGCAGCTGGCCTTCAATGTACACCTGA 27356 Query 32947 GACCCTTTACGAAGATACTCTCCTGCAACTTCCGCAATTTTTCCGAAGATAACAACTCGA 33006 || |||||||| |||||||| || || |||||||| | ||| ||||| | ||||| || Sbjct 27357 GAGCCTTTACGCAGATACTCACCAGCGACTTCCGCCAGTTTGCCGAACAGCACAACGCGG 27416 Query 33007 TGCCATTCAGTATGTTCTTTCTTTTCTCCTGTTTGCTTGTC 33047 ||||| || || || |||||| |||| || || |||||||| Sbjct 27417 TGCCACTCGGTCTGCTCTTTCATTTCGCCGGTCTGCTTGTC 27457 >seq4750 Length=4641 Score = 107 bits (118), Expect = 6e-19 Identities = 182/264 (69%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 32907 CCACTTACGAGTGCGAAGTTGTCCTTCTATATAAACCTGCGACCCTTTACGAAGATACTC 32966 ||||| || || |||| | ||||| || || |||||||| ||||| || |||||||| Sbjct 4240 CCACTCTCGTGTTTGAAGCTTACCTTCGATGTATACCTGCGATCCTTTCCGCAGATACTC 4181 Query 32967 TCCTGCAACTTCCGCAATTTTTCCGAAGATAACAACTCGATGCCATTCAGTATGTTCTTT 33026 || || | ||| || | ||| || || | | ||| || |||||||| || | ||| Sbjct 4180 ACCAGCGATTTCAGCGACTTTCCCAAACAAAGAAACACGGTGCCATTCGGTCTTTTCGAC 4121 Query 33027 CTTTTCTCCTGTTTGCTTGTCTTTCCACTGCTCAGATGTTGCAACAGAAAGGTTCGCAAT 33086 || | ||| ||||||||||| ||||||||||| |||||||| || || | | Sbjct 4120 TTTCTGTCCCGTTTGCTTGTCAGTCCACTGCTCACTTGTTGCAAGGCTGAGATTGGTTAC 4061 Query 33087 TGCAGAGCCTGATGCTGAATATTTAACTTCAGGGTCATTTCCGAGAGTGCCGACAATGAT 33146 |||| || | | | || | ||| || || | || ||||| || | ||| Sbjct 4060 TGCATTACCGTTCGGTAAGTAGCGAGTTTCTGGATCTTGACCACAGGTGCCAACCAAGAT 4001 Query 33147 TACTTTATTTACGCCGCGTGCCAT 33170 ||||||||||||||||| ||||| Sbjct 4000 CACTTTATTTACGCCGCGAGCCAT 3977 >seq97 Length=44549 Score = 87.8 bits (96), Expect = 5e-13 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 32912 TACGAGTGCGAAGTTGTCCTTCTATATAAACCTGCGACCCTTTACGAAGATACTCTCCTG 32971 |||| |||||||| || ||||| || || ||||||| || || || ||||| || || | Sbjct 4965 TACGGGTGCGAAGCTGACCTTCGATGTAGACCTGCGCGCCCTTGCGCAGATATTCGCCAG 4906 Query 32972 CAACTTCCGCAATTTTTCCGAAGATAACAACTCGATGCCATTCAGTATGTTCTTTCTTTT 33031 | |||||||| | || ||||| | || || ||||||||||| || || || | | | Sbjct 4905 CCACTTCCGCGAGCTTGCCGAACAGCACCACGCGATGCCATTCTGTCTGCTCCCGCATCT 4846 Query 33032 CTCCTGTTTGCTTGTC 33047 | ||||| || ||||| Sbjct 4845 CCCCTGTCTGTTTGTC 4830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143993317885862