Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq177 228 4e-55 seq47 194 8e-45 seq3571 150 9e-32 seq11306 149 3e-31 seq19644 129 3e-25 >seq177 Length=203703 Score = 228 bits (252), Expect = 4e-55 Identities = 441/647 (68%), Gaps = 13/647 (2%) Strand=Plus/Plus Query 65964 CCGAGGGGCCGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGC 66023 |||| ||||| | || ||||| ||||| || || || || ||| |||| || Sbjct 103606 CCGAAAGGCCGCATTGTCGAGATTTACGGGCCGGAAAGCTCGGGTAAGACAACCCTGGCG 103665 Query 66024 CTCCACGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAA 66083 || || || | || | ||||||||| || |||| | ||||| | ||||||| ||| Sbjct 103666 CTGCATACGATTGCGGAAGCCCAGAAGAAGGGCGGCATCTGCGCCTTCGTCGACGCGGAA 103725 Query 66084 CATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTT 66143 ||| | || ||||| | || ||| ||| || |||||| | || ||||| || | Sbjct 103726 CATGCGCTGGACCCGGTCTATGCCCGCAAGCTGGGCGTGGATCTGGAGAATCTGCTGATC 103785 Query 66144 GTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGC 66203 |||||| || || ||||||||||| ||||||||| ||| || || || || Sbjct 103786 TCGCAGCCCGATACGGGCGAGCAGGCGCTGGAGATCACCGACACGCTGGTGCGTTCCGGT 103845 Query 66204 GAGGTTTCCATCATC--GTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCG 66261 | | | | || || || || || || || || || || ||||| ||||| ||| Sbjct 103846 GCGAT--CGATGTTCTGGTGGTCGATTCCGTTGCCGCTTTGACCCCGCGTGCGGAAATCG 103903 Query 66262 AAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGC 66321 |||| || || || || || | | ||||||||| |||||||||||| ||||| ||| Sbjct 103904 AAGGCGAGATGGGCGATTCTCTCCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGC 103963 Query 66322 GCAAGCTGACCGGCACGATTGCCAGCACCAAC---ACGCTCACCCTGTGGGTGAATCAGC 66378 |||||||||||| | ||| || | ||||| | | ||| | | | || ||| Sbjct 103964 GCAAGCTGACCGCATCCATTTCCCGTTCCAACTGCATGGTCA---TTTTCATCAACCAGA 104020 Query 66379 TGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGG 66438 | ||| |||||||||| ||| | ||| || ||| ||||| || || || || | Sbjct 104021 TCCGCATGAAGATCGGC---GTGATGTTCGGTTCGCCTGAAACCACGACGGGCGGCAATG 104077 Query 66439 CTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAG 66498 | ||| ||||| || ||||||||| | ||| ||||| | |||| | ||||||| Sbjct 104078 CGCTGAAATTCTATGCTTCGGTGCGTCTCGATATCCGCCGCATCGGTGCGCTGAAGGAAC 104137 Query 66499 GCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTC 66558 | || |||| |||||||||| || ||||| ||||| |||||||||||||| ||||| | Sbjct 104138 GTGACGAGGTGGTCGGCAACCAGACCCGCGTCAAGGTGGTCAAGAACAAGCTTGCGCCCC 104197 Query 66559 CGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCATTTCC 66605 | | |||| || || |||| | || ||||| ||| ||||| Sbjct 104198 CCTTCAAGCAGGTCGAATTCGACATCATGTATGGCGAAGGCGTTTCC 104244 >seq47 Length=21181 Score = 194 bits (214), Expect = 8e-45 Identities = 472/706 (67%), Gaps = 17/706 (2%) Strand=Plus/Plus Query 65903 TGTGGACACCATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTA 65962 |||||| ||||| ||||||||||| | ||||||| ||| || ||| ||| || Sbjct 15583 TGTGGAAACCATCTCCACCGGCTCGCTTTCTCTGGATATCGCGCTGGGCGCCGGCGGTCT 15642 Query 65963 TCCGAGGGGCCGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTG 66022 || | |||||| | || |||||||||||||| || || || || || | || || Sbjct 15643 GCCAATGGGCCGTATCGTCGAGATCTACGGTCCGGAATCCTCCGGTAAAACCACCCTGAC 15702 Query 66023 CCTCCACGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGA 66082 || || | | ||| || ||| | ||| | | || | |||||| || || Sbjct 15703 GCTGCAGGTTATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTCATCGATGCTGA 15762 Query 66083 ACATTCTCTCGACCCTGAGTACGC-CGCGGCGCTCGGGGTGGATGTCGACAATCTCGTG- 66140 |||| | || || |||| || || ||| || || || ||| ||||||| || || Sbjct 15763 ACATGCGCTGGATCCTGTCTATGCACGCAAA-CTGGGCGTCGATATCGACAACCTGCTGT 15821 Query 66141 GTTGTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCT 66200 ||| | ||||| ||||| ||||||||||| ||||||||| |||| || | ||| Sbjct 15822 GTTCT-CAGCCGGACACCGGCGAGCAGGCGCTGGAGATCTGTGACGCGCTGGCGCGCTCT 15880 Query 66201 GGCGAGGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTC 66260 || | |||| | ||||| || ||||| || ||||| || |||| ||||| || Sbjct 15881 GGTGCGGTTGATGTTATCGTCGTCGACTCCGTCGCGGCGTTGACGCCGAAAGCGGAAATC 15940 Query 66261 GAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATG 66320 ||||| || ||||| ||||| ||| | ||||| || || ||||| ||||| ||| Sbjct 15941 GAAGGCGAAATCGGCGACTCTCACATGGGCCTTGCGGCGCGTATGATGAGCCAGGCGATG 16000 Query 66321 CGCAAGCTGACCGGCACGATTGCCAGCA--CCAACACGCTCACCCTGTGGGTGAATCAGC 66378 || |||||| | || | | |||| |||||||||| | | | || ||| Sbjct 16001 CGTAAGCTGGCGGGTA--ACCTGAAGCAGTCCAACACGCTGCTGATCTTTATCAACCAGA 16058 Query 66379 TGCGCGAGAAGATCGGCAACGTGGGCTACGG---CCCGAATGAGACCACCACCGGTGGTA 66435 | || ||| || || |||| | ||| |||| || ||||| |||||||||| Sbjct 16059 TCCGTATGAAAATTGG---CGTGATGTTCGGTAACCCG---GAAACCACTACCGGTGGTA 16112 Query 66436 AGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGG 66495 | || ||| ||||||||||| |||||| |||| | ||| | |||| | | | ||| | Sbjct 16113 ACGCGCTGAAGTTCTACGCCTCTGTGCGTCTGGACATTCGCCGCATCGGCGCGGTGAAAG 16172 Query 66496 AAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGC 66555 | ||||| | | ||||||| | || ||||| || || || || |||||| | || Sbjct 16173 AGGGCGACAATGTCGTCGGCAGCGAAACCCGCGTCAAAGTGGTGAAAAACAAGATTGCCG 16232 Query 66556 CTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCAT 66601 | ||| ||||| || || ||| |||||||||| ||||| Sbjct 16233 CGCCGTTTAAACAGGCCGAATTCCAGATCCTCTACGGCGAAGGCAT 16278 >seq3571 Length=1035 Score = 150 bits (166), Expect = 9e-32 Identities = 284/418 (68%), Gaps = 0/418 (0%) Strand=Plus/Plus Query 65917 CCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGG 65976 |||| ||||| | | ||||||| ||| |||||||| || || || | ||||| Sbjct 548 CCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCGGCCTGCCAAAAGGCCGTA 607 Query 65977 TAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGG 66036 | || ||||||||||||||||| ||||| || || | || || ||| | | | | Sbjct 608 TCGTTGAGATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTGATTG 667 Query 66037 CCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTCGACC 66096 || | || || || || | || | || | | |||| ||||| || | || || | Sbjct 668 CCCAGGCACAAAAAATGGGCGCCACCTGTGCGTTCGTCGATGCCGAGCACGCCCTGGATC 727 Query 66097 CTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCAGACA 66156 |||| ||||||| ||| || || | || ||| | || ||||| ||| || |||| Sbjct 728 CTGAATACGCCGGCAAGCTGGGCGTCAACGTTGACGACCTGCTGGTTTCGCAACCGGACA 787 Query 66157 CTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCA 66216 | || ||||| || ||||| ||| ||| | || || || || | | | | Sbjct 788 CCGGTGAGCAAGCGCTGGAAATCACCGACATGCTGGTGCGCTCCAACGCCATCGACGTGA 847 Query 66217 TCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGG 66276 |||| || ||||| ||||| |||||||| || ||| || ||||||| || || || | Sbjct 848 TCGTGGTCGACTCCGTGGCAGCCCTGGTACCCAAGGCTGAAATCGAAGGCGAAATGGGCG 907 Query 66277 ACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACCGG 66334 || |||||| ||||| || |||||| ||||||| |||||| |||| || | ||||| Sbjct 908 ACATGCACGTGGGCCTTCAAGCCCGCTTGATGTCCCAGGCCCTGCGTAAAATCACCGG 965 >seq11306 Length=553 Score = 149 bits (164), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 66385 AGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGC 66444 ||||||||||| | | || |||| || ||||| ||| ||||||||||||| ||| Sbjct 553 AGAAGATCGGCGTCTT---CTTCGGCTCGCCCGAGACGACCGCCGGTGGTAAGGCGCTGA 497 Query 66445 GCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATG 66504 |||||||||||||| || ||||| |||| | |||| ||| ||||| || | Sbjct 496 AGTTCTACGCCTCGGTCCGCATGGACATCCGTCGTATCGAGACCCTCAAGGACGGAACCG 437 Query 66505 AGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACC 66564 | || ||||| |||||||| | || ||||| |||||||||||| ||||||| ||| | Sbjct 436 ACGCCGTCGGAAACCGCACCAGGGTCAAGGTGGTCAAGAACAAGATGGCGCCGCCGTTCA 377 Query 66565 GCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAGG 66612 ||||| ||||| |||| ||||||||| ||||| ||||| |||| Sbjct 376 AGCAGGCCGAGTTCGACATCCTCTACGGCGTCGGCATCTCCCGTGAGG 329 >seq19644 Length=1527 Score = 129 bits (142), Expect = 3e-25 Identities = 218/311 (70%), Gaps = 11/311 (4%) Strand=Plus/Minus Query 59303 GTCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCGCC 59362 || || | ||| || ||||||||||||||||| | ||| || |||| | | || || Sbjct 1183 GTGGGAAACCTCACGGCCGACCCCGAGCTGCGCTACACGCAGAACGGGCTGCCGGTGGCG 1124 Query 59363 AACTTCACCGTCGTGTCCAAC-----GAACGCCG-CCGCGACGCCCAGGGCAACTGGGTC 59416 ||||||||| ||| || | |||| || ||| | ||| | | | ||| Sbjct 1123 AACTTCACCATCGCATCGACGCCTCGGAACTTCGACCGTGCCGCGAATG---AGTGGAAG 1067 Query 59417 GACGGCGACGCCACATTCCTCCGCTGCA-CCATCTGGCGCGACGCCGCCGAGAACGTAGC 59475 |||||||| || |||||||| |||| || |||||||||| ||||||| |||| || Sbjct 1066 GACGGCGATGCGCTGTTCCTCCG-TGCATCCGTCTGGCGCGAGTTCGCCGAGCACGTGGC 1008 Query 59476 GGAAAGCCTCCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTT 59535 || | ||| ||| ||||||||||| ||| ||| || |||||||||| Sbjct 1007 GGGTTCGTTGACGAAGGGCATGCGCGTCATCGCGCAGGGCCGTCTGCGTCAGCGCTCCTA 948 Query 59536 CGAGACCAAGGAAGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCC 59595 | || | || ||| || ||||||||| |||||| ||||||| |||||||||||||| Sbjct 947 CCAGGACCGCGAGGGCAACCAGCGCACCGCGATCGAGCTGGAGGTCGACGAGATCGGCCC 888 Query 59596 GTCGCTGCGGT 59606 ||||| |||| Sbjct 887 CTCGCTCCGGT 877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242386986166484