Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq13335 239 4e-58 seq19281 141 9e-29 seq19 136 4e-27 >seq13335 Length=4250 Score = 239 bits (264), Expect = 4e-58 Identities = 505/749 (67%), Gaps = 21/749 (3%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||||| || || ||||||||| |||| || || |||| |||||||| || || |||||| Sbjct 2760 GCCACGCCCACGCTGTTCAACTCGGGCACGCCAATGCCCCAGATGTCGTCATGCTTCCTG 2701 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || || |||| |||||| ||| ||||| | ||| | || ||| | || || Sbjct 2700 GTGCAGATGAAGGACGACTCTATCGATGGAATCTACGATACTCTGAAGCAGTGCGCATTG 2641 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||| || | || || || ||||| | || ||| | | |||||| | | || Sbjct 2640 ATCAGCAAGTCGGCCGGAGGCATCGGTTTGTCGGTGCACAAGATCCGTGCCGCGCGCTCG 2581 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||||||||| ||||| || ||||| ||||| || || || ||||| || ||||| ||| Sbjct 2580 TACATCCGCGGCACCAACGGTACCTCGAACGGACTGGTTCCAATGCTGCGTGTCTTTAAC 2521 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || | || || || || ||||||||||| || | | | ||||| | || || |||| Sbjct 2520 GACACTGCACGTTATGTTGACCAGGGTGGCGGCAAGCGCAAGGGCGCCTTTGCCATCTAC 2461 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||| |||||||| ||| | || ||| | |||||||| |||||||||||||| Sbjct 2460 CTGGAGCCATGGCACGCCGACATCATGGAGTTCCTTGACCTGCGCAAGAACCACGGCAAG 2401 Query 94252 GATCTGGAGAGG---GCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || ||||| | || | |||||||||||||| |||||| | | ||| | |||||| Sbjct 2400 GA---GGAGATGCGTGCTCGCGACCTCTTCTACGCACTCTGGATCTCTGACTTGTTTATG 2344 Query 94309 AAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTG 94368 | ||||| ||| ||| ||| |||| || || || || || || || || || Sbjct 2343 CAGCGCGTTGAGGCCAACGCCGACTGGTCACTCTTCTGCCCGAACGAGGCGCCAGGCCTT 2284 Query 94369 TCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCG-CAGGGCAA 94427 ||||| || || | || | || | || || |||||| || || | Sbjct 2283 GCCGACACCTGGGGCGAGAAGTTCAACGAACTCTACCTGCGCTACGAAGCGACA---CCC 2227 Query 94428 GGCCAGGAAGG-----TTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAG 94482 |||| | | | || | || | |||||| |||| | || ||| Sbjct 2226 GGCCTCGCACGCCGCACCATCAAGGCACAAGACCTGTGGTTCTCGATCCTCGAGTCCCAG 2167 Query 94483 GTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAG 94542 | ||||| || || || |||||| | | ||||||||| ||| | |||||||||||| Sbjct 2166 ATCGAGACAGGCACCCCGTACATCCTATACAAGGACTCGTGCAATGGCAAGTCCAACCAA 2107 Query 94543 CAGCACCTCGGGGTGATC---AAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACT 94599 ||| ||||||| ||| |||| || |||||||||||||| || |||| || Sbjct 2106 CAGAACCTCGGCACTATCTCGTCGAGC---AACCTGTGCACCGAGATCATCCAGTACACG 2050 Query 94600 TCTCCGGACGAGATTGCTGTGTGTAACCT 94628 || || || ||| | ||||| || ||||| Sbjct 2049 TCGCCAGAGGAGGTGGCTGTCTGCAACCT 2021 Score = 125 bits (138), Expect = 7e-24 Identities = 300/459 (65%), Gaps = 6/459 (1%) Strand=Plus/Minus Query 95104 GCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCC 95163 || || |||||||| || || || | || ||||| ||||||||||| | ||||| || Sbjct 1539 GCTCCAATGCCCACCGCATCGACCTCCCAAATCCTCGGCAACAACGAAGCTTTCGAGCCA 1480 Query 95164 TTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAG 95223 | |||| |||| | |||| | || ||||| ||||| || ||| ||||| |||||||| Sbjct 1479 TACACCAGCAACATTTACAGTCGTCGTGTGCTTGCCGGTGAGTTCACCGTCGTCAACAAG 1420 Query 95224 CACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTG 95283 || || || | |||| ||| | | || ||| ||||| | || | |||||| | | Sbjct 1419 CAGCTGCTGCAGGACTTGATGGCACTCGGTCTGTGGACACCCGAGATGAAGAACGA---G 1363 Query 95284 CTACGCGCCAAC---GGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCG 95340 | |||||| || || ||||| ||| || || || ||| | || | | Sbjct 1362 ATCATTGCCAACCGTGGTTCGATCCAGGCGATCGATTCCATCCCCGAAGACCTGAAAGAG 1303 Query 95341 CTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCGACCACGCGGCCGCCCGC 95400 || |||||||||||||||||||||| |||||| | |||| ||||||| ||| Sbjct 1302 CTGTACAAGACCGTGTGGGAGATCCGTCAGCGCACACTGATCGATATGGCGGCCGACCGT 1243 Query 95401 GGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNNNNNATGGCCGAGCCCAGTCGCGGA 95460 || | |||||| ||| || || |||||||| || | Sbjct 1242 GGTGCTTTCATCGACCAAAGTCAGAGCTTCAACGTGTTTATCGCCGAGCCAAGCTTTGCC 1183 Query 95461 AAAATAACGTCCATGTTGTTCTACGGGTGGAGAAAGGGTCTCAAGACCGGTATGTATTAT 95520 || | || || ||| || || | |||| ||||| || ||||| || ||||| || Sbjct 1182 AAGCTCACCTCGATGCACTTTTATGCCTGGAAGAAGGGACTGAAGACTGGCATGTACTAC 1123 Query 95521 TTGCGAACCAGGCCAAAGGCGGACTCCATACAGTTCGCC 95559 |||| ||||| | || ||| |||| |||||| || Sbjct 1122 CTGCGTACCAGAGCCGCCGCCGACGCCATCCAGTTCACC 1084 >seq19281 Length=570 Score = 141 bits (156), Expect = 9e-29 Identities = 185/256 (72%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||||| || |||||||||||||| || || || | || || ||||| ||||| ||||| Sbjct 256 GCCACGCCAACCCTGTTCAACGCTGGCACTCCCATCCCTCAAATGTCGTCGTGCTTCCTC 197 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | || |||| ||||| ||| || || | ||||| |||||| | || || | Sbjct 196 GTCCAGATGAAGGAGGACTCGATCGAGGGCATCTACGACACTCTCAAGCAGTGCGCTCTC 137 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || | || || || ||||| || ||||| | | |||||| | |||| Sbjct 136 ATCTCCAAGTCTGCTGGTGGCATCGGTGTCGCCATCCACAAGATCCGTGCCTCGCGTTCA 77 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||||| || ||||| ||||| |||||||| |||||||| ||||| || || ||||| Sbjct 76 TACATCCGTGGCACCAACGGCACATCCAACGGTCTCGTCCCCATGCTGCGTGTGTTCAAT 17 Query 94132 AACGCGGCGCGCTACG 94147 || | || ||||||| Sbjct 16 GACACTGCTCGCTACG 1 >seq19 Length=770976 Score = 136 bits (150), Expect = 4e-27 Identities = 404/623 (65%), Gaps = 0/623 (0%) Strand=Plus/Plus Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 || ||| || ||| || || || || | || |||| || | ||||||| ||| || Sbjct 361745 ATTTCACAAAGCGCAGGTGGTATTGGTTTAAGCATCCATAACATCCGTGCCACGGGATCT 361804 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 || || | || || || || ||| ||| || | || |||||| | || || ||| Sbjct 361805 TATATTGGTGGAACAAACGGGACCAGCAATGGGATTGTACCTATGTTGAAAGTATTTAAC 361864 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 | | || || || |||||||||||||| || | | || ||| |||| || | || Sbjct 361865 GATACCGCCCGTTATGTGGACCAGGGTGGAGGTAAACGTAAAGGTGCTTTTGCCATTTAC 361924 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||| ||||| || || |||| | ||| | |||||||| || ||||| || || Sbjct 361925 CTGGAGCCATGGCATGCAGATGTGCTGAGTTTTCTGGACCTGCGTAAAAACCATGGTAAA 361984 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || | |||||||| | ||||| || || ||||| ||||| || |||| | Sbjct 361985 GAAGAACTTCGTGCCAGAGATTTATTCTATGCCCTTTGGGTATGTGACCTGTTCATGAGA 362044 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 | || || ||||| | ||||||| | || ||||| ||||| || |||||| | Sbjct 362045 AGGGTAGAAGAAAACGGAGACTGGAGTTTATTCTGTCCTCATGAAGCCCCGGGACTGGCA 362104 Query 94372 GACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCC 94431 || | ||| | || || | || |||| ||||||||| | || ||| Sbjct 362105 GATTGCTTTGGTGCAGAATTCGATGCTTTATATGAGCGTTACGAAAAAGAAGGACGTGCC 362164 Query 94432 AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACG 94491 | || || | || |||| ||| | || |||| |||| | || || Sbjct 362165 CGTAAAACCATTAAAGCACAAGAGCTTTGGTTTGCCATTCTGGATTCACAGATTGAAACC 362224 Query 94492 GGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTC 94551 || || || || | |||| || || | | ||| ||| ||||||||||| | | Sbjct 362225 GGAACCCCTTATCTGTTGTATAAAGATGCAGCAAACAGCAAATCCAACCAGCAAAATTTA 362284 Query 94552 GGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAG 94611 || ||||| || || || || || || || ||| | ||||||||||| |||||| Sbjct 362285 GGAACCATCAAAAGTTCCAACCTTTGTACAGAAATTATAGAGTATACTTCCAAAGACGAG 362344 Query 94612 ATTGCTGTGTGTAACCTGGGCTC 94634 ||||||| |||||||||| ||| Sbjct 362345 GTTGCTGTATGTAACCTGGCCTC 362367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494548643102920