Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_011611.1 Length=36885 Score E Sequences producing significant alignments: (Bits) Value seq3931 567 2e-157 seq8746 131 4e-26 seq1016 98.7 2e-16 >seq3931 Length=1953 Score = 567 bits (628), Expect = 2e-157 Identities = 1128/1642 (69%), Gaps = 49/1642 (3%) Strand=Plus/Plus Query 177 ATCCAGCGGCCTGCCCATACCACGCGACCAATGATGTCGATTGCCTCTAGGTCTTGCTTG 236 ||||| | ||| |||||||| ||||| ||||| || || | | | | | | | || Sbjct 56 ATCCAACCGCCAGCCCATACTACGCGGCCAATTATCTCCAGGTCGTTCAACTTATCCCTG 115 Query 237 G--ACACGTACATCGTCTGGTAGGCCGAATTAGCGCTAATGATCGC--TAGACCGCCATT 292 | ||| | |||| |||||||| || | || ||||| |||||| | | Sbjct 116 GGGACAACCATATCGC--GGTAGGCCTTGTTCTCACTGATGATGTGAATAGACC--CGTC 171 Query 293 GATTTGCCGCTGGATTCGCTTGGCGTATAGGTGGTCATCCAACCGAATGACGTAGATAGC 352 || |||||||||| | || || || || |||||||||| ||| |||||||| | ||| Sbjct 172 GAACTGCCGCTGGAGCCTTTTCGCATAGAGATGGTCATCCAGCCGGATGACGTATACAGC 231 Query 353 CTCGTCGCGGACCTCGCCGCAGCTGTGGTCAATCATCACCGTATCACCATCGCTCAACAG 412 ||| | | | || || |||||||||||||||||| ||||| |||||||| | || Sbjct 232 CTCTCCCTCAAGCGAGCTGCGGCTGTGGTCAATCATCACAGTATCGCCATCGCTTAGAAG 291 Query 413 CGGCTCCATTGAGTCACCGCCGATGCGAACGGCTGACATATTCGCTATCTCCAGACCTTG 472 |||||| || || ||| | | || | || |||| ||| ||||| ||||| Sbjct 292 TCCCTCCATCGAATCCCCGTCCACTCGGATTGCGGACAGTCGCGCAGAGTCCAGGCCTTG 351 Query 473 CTTCCGCAAGC-TGTA-GCGAGTGAACGCCAGCTTGGCCAAGGTCCG-CGCGCCCTCCAT 529 ||| || |||| ||| ||| |||||||| ||| ||| ||| | | || || || | Sbjct 352 CTTGCG-AAGCGAGTACGCG-GTGAACGCAAGC-TGGGTTAGGACAGTAGCCCCTTCGCT 408 Query 530 CCAGGAACCGTGGCCAGCACTCACCCGCGCGTCGTAGAGGGGTACGTAGGCGTAGGTGTC 589 ||||| ||||| || ||||| | |||||||| | || ||||| ||||| |||| Sbjct 409 CCAGGCGCCGTGTCCCGCACTACAGTGGGCGTCGTACAAAGGCACGTAAGCGTACTTGTC 468 Query 590 ATCCTCTGCGGCTTCATCCGGG--GCAGCGCTGTGCA---TTTCCCCCTCCCCGGTAGCT 644 ||| | || | ||| ||||| | | || | |||||||| || | ||| Sbjct 469 CTCCGCAATGG-----ACTGGGAAGCAGCTCCCTTCAACTTGTCCCCCTCGCCTGAAGCA 523 Query 645 AGCCAGCCAATGTCCACCCCCGCAGCCTTTGCAATGTCCACACACCGCGCAAGCTTGGGT 704 |||||||||||||| || || | ||||| || ||||| ||||||||||| | |||||| Sbjct 524 AGCCAGCCAATGTCGACGCCGACCGCCTTAGCGATGTCTACACACCGCGCTACCTTGGGC 583 Query 705 TCACTGTCGCCGGTCAAGTAGTACTCCAGGGTACGCCTAGGGATAGCGGTTAGTCGCGCG 764 ||||| | ||||||| ||| ||||| ||||| || | ||||||||||| |||||||| Sbjct 584 TCACTCTGCCCGGTCAGGTAATACTCAAGGGTGCGTCGTGGGATAGCGGTAAGTCGCGCC 643 Query 765 AGTTCATCGCCACTTCCAACCAAGGCGGCGCAGGTTCTAATCCGAGCAGCCAGACCTTCG 824 | |||||||||||||| | | | ||||| | || || | ||||| |||||| Sbjct 644 AACTCATCGCCACTTCCCGCTATCTCAGCGCATTGCCGGATACGTTCCGCCAGCCCTTCG 703 Query 825 GTCATTTCGCTTTCCCCTCAGAAGAAAGCGAAA-TGCAGCCAAGAAAAATAGCTAAATTT 883 ||||||||||||| || || | ||||| ||| || | | || ||| |||||| Sbjct 704 CTCATTTCGCTTTCTCCCTTGAGCTATCCGAAACGGCATCCCTGCACAA-AGCGAAATTT 762 Query 884 CGCTTTGTC-AGGAAGCCTTTAGATATCAATGACTTAGCCAATTCTCGCCTCTTTATTGA 942 |||||| || | ||||| ||| | ||||| || ||| ||| || | | | Sbjct 763 CGCTTTCTCGATAAAGCC-TTACAGATCAAAGAGATAGACAAAATCAACCACCATCAAGC 821 Query 943 TAAATCTGGCAAGCGAAACGCCATTTTTCGCTTTACCAGCTGGCTGTTAATGGCTATGTT 1002 ||| ||| |||||||| ||||||||||||||||||| | | | | |||||||||| Sbjct 822 CAAAGATGGAAAGCGAAAAGCCATTTTTCGCTTTACCACATAGTTATATTTGGCTATGTT 881 Query 1003 TATGCCCTAAGTCACGTTAGACAACCCAAGTAGTCGCCCTGCATGGCGGCT-GAAATGGA 1061 ||||||||| || |||||||||| ||||| | | |||| || || | |||||| Sbjct 882 TATGCCCTAGGTAACGTTAGACATCCCAAAAAACCACCCTTGCCGGTGGTTATGAATGGA 941 Query 1062 ACGTAGGCATGAACAGAACCGAAATCCCCCGCGACAACAACGTCCGCTGGGAGTGGATCA 1121 |||||||||||| |||||||||||| | ||| | | | || ||||| ||||||| Sbjct 942 CGCTAGGCATGAACAAAACCGAAATCCCGCTTGACCCAACCCTGCGATGGGAATGGATCA 1001 Query 1122 AATACCAGCTCCGTGCCAGGGGGTCGTCCCTGGCTGAGGTGGCCCGCTCCCTCGACGTCT 1181 ||||||| || ||| || | || |||| || || |||| || || ||||| | Sbjct 1002 AATACCAACTTCGTACCCGAGGTACGTCACTCGCAATCTTGGCGCGTGAACTTGACGT-T 1060 Query 1182 CCAG-CCCGGCAGTCAAAAACGCCAAGCTGACTCCCTACCCTCGGGTAGAGCGCGCCATA 1240 ||| | || ||||| ||||| |||| || | || || || | ||||| || || Sbjct 1061 ACAGATGCTGCCGTCAAGAACGCTAAGCGCACCGCATATCCGCGAATGGAGCGAGCTATT 1120 Query 1241 GCTGCTGTACTCGACCTCAGCCCGCTAGTGCTGTGGCCAGAGCGCTGGCTAGACGACGAG 1300 || || || | ||||| || | | ||||||| || || ||| | ||| Sbjct 1121 GCCCGTGCGCTAGGCCTCAAGCCAATCGACTTGTGGCCCGAACGTTGGAACGCAAACGGC 1180 Query 1301 AATCCGAAGCGGCAACGGCCGAATCGCTCGGAGACCTTGCAGGCATATGTCAGACATATG 1360 | || | || ||| | | ||| | || || | ||| | || || | Sbjct 1181 ACCCCACACCGTATTCGGGTGCAGCGCGCAGA-AC--ACAACGCA-ACTTC-----TA-G 1230 Query 1361 CCAGGTGCTGAGGAAAATACCAGATACGCTGACCAAGCGCAGCGTAAAGCCGGCGCGGGG 1420 ||| | || | | |||| | || || || |||||| ||||| ||| | Sbjct 1231 CCAAGAGC------ATAACCCAGCT--TATGCCCTTCGACACCGTAAAACCGGCACGGAG 1282 Query 1421 GCTTGAACATGGCCCGCCGCAAAGACGATCGAACGCTGGACATCTTCGATGTTCCGCAGC 1480 | | |||||| ||| || || ||||| ||| | ||||||||| ||| || |||| Sbjct 1283 GTATAAACATGCGCCGTGTAAAGGATGATCGTACGTTAGACATCTTCTCTGTCCCACAGC 1342 Query 1481 CGGCCCTCGCTATACCTGGTGAGTGCAACTACGCCGCTCAAGTCAGCGAACTGGTCAGCG 1540 | | || ||||| || || | ||||| | ||||| || ||||| |||||| |||||| Sbjct 1343 CAGTTCTGGCTATCCCAGGGAATGGCAACAATGCCGCACAGGTCAGTGAACTGATCAGCG 1402 Query 1541 AAATTCTGAAGGCTTGCGACCTTGACCGTTACGAGGTCGCCGCCCGGATGTCGCGCCTGT 1600 | |||||||| | || ||| || ||||||||||| | | || || ||||| ||| ||| Sbjct 1403 AGATTCTGAAAGGTTCCGATCTGGACCGTTACGAAATTGGTGCACGCATGTCTCGCTTGT 1462 Query 1601 CCGGCGATGACGTGAGCAAGAACATGCTCGACGCCTGGTCGAGTCCCGCCCGAACTGATC 1660 | |||||||||||||| ||| ||||||| ||||| |||||||| || |||||||| || | Sbjct 1463 CTGGCGATGACGTGAGTAAGCACATGCTTGACGCGTGGTCGAGCCCAGCCCGAACAGACC 1522 Query 1661 ACAACTTGCCTTTCTACCGCGCCGCCCTTCTGGAGGACGTCTGCGCGAGCCATCTGCTGA 1720 | ||| |||| ||||| | ||| | || || || || || || || || | | | Sbjct 1523 ATAACCTGCCGTTCTATAGAGCCCCACTGCTTGAAGAAGTTTGTAGCAGTCACGTTTTAA 1582 Query 1721 CCAACTGGCTGGTCGATGTACGTGGCGGCCGCGTGGCTTACGGCCGCGATGCACTGCTCG 1780 || |||||||||| || |||||| ||||||||||||||||| ||||||||||| || Sbjct 1583 CCGACTGGCTGGTTGAGCAACGTGGTGGCCGCGTGGCTTACGGTCGCGATGCACTCAACG 1642 Query 1781 CCGAACTGGGCCGCCTTGAGCG 1802 | || || || || || | ||| Sbjct 1643 CGGAGCTTGGTCGTCTGGCGCG 1664 >seq8746 Length=2069 Score = 131 bits (144), Expect = 4e-26 Identities = 122/152 (80%), Gaps = 5/152 (3%) Strand=Plus/Minus Query 9443 CATTGAGCGAAACCGCCCCGGCCTGGCCGGGACGGTCTGCCGGACGTGGTAGTCCGGTAC 9502 |||| ||||||| ||||||||| | | ||| |||||||||||||||||| ||||||||| Sbjct 1750 CATTAAGCGAAATCGCCCCGGCGCG-CTGGGGCGGTCTGCCGGACGTGGTTGTCCGGTAC 1692 Query 9503 TGATGAGCAGCCACCCATGACGAACGAA--ACCAAGACAGACCGCCAGCGCCGCCTGGCG 9560 ||||||||||||||||||||| ||||| ||| | |||| ||| | ||||||||| Sbjct 1691 TGATGAGCAGCCACCCATGACAGACGAAACACCCAAACAG--CGCAAAACCCGCCTGGCA 1634 Query 9561 CGGGAACGCCAACGGGCGAAGCGCGAGCGCGA 9592 | || || |||| || ||||| ||||||| Sbjct 1633 TGCGAGCGTAAACGTGCCCAGCGCAAGCGCGA 1602 Score = 86.0 bits (94), Expect = 1e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 9839 AAAATCCACATCGCCAAGGCCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTC 9898 || ||||||||||||||| | || || |||| || || ||||| || || ||| | Sbjct 1373 AAGATCCACATCGCCAAGAAGGACCTTGGGCTGGATGACGAAACCTACCGGGCCTTGTTG 1314 Query 9899 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACTTAGGGCCGCGCCAGATCGACCACGTA 9958 | ||||| ||||| ||||| |||||||| ||| | ||| |||||||||| | ||| Sbjct 1313 GGCCGCGTGGCGGGTGTGCGTTCGGCCAAAGACCTGACGCCACGCCAGATCGGCGCTGTA 1254 Query 9959 CTGGTCGAACTCCAGCGCCTGGGCTGG 9985 |||| ||| | ||| |||||||| Sbjct 1253 CTGGCCGAGTTTGCCCGCTTGGGCTGG 1227 >seq1016 Length=5115 Score = 98.7 bits (108), Expect = 2e-16 Identities = 169/241 (70%), Gaps = 11/241 (5%) Strand=Plus/Plus Query 11530 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTTTGGTCGGCACG--CAACAA 11587 |||| ||||| | |||||| ||| ||||||||||||| || || | || |||| | Sbjct 1150 AACC-CGCGGGGTGCGCAACCGCAATCCCGGCAACATCGATTA--CGTCCCGGCCAACCA 1206 Query 11588 CTGGCAGGGCCAGCTCCCGCACAACCCGAAGATCGAGCCCCGATTCGCCCGCTTCGACAC 11647 ||||| ||||| || | ||||| || ||| || || ||||| || || || Sbjct 1207 ATGGCAAGGCCAACTGAAACCAGACCCGGCTATAGAGAAACGCTTTGCCCGGTTTGATAC 1266 Query 11648 CGCGCATAACGGCATCCGCGCCCTGGCAAAGCTGCTGCTGAACTAT---CGCAAGGTCCA 11704 || | ||||||||||| ||||||| ||||||||||||| |||| |||||| || Sbjct 1267 GCCGGAAAACGGCATCCGTGCCCTGGGCAAGCTGCTGCTGACCTATCAGCGCAAG---CA 1323 Query 11705 CGGCCTGCGCACCGTCGAATCGTTGATCGCACGCTGGGCGCCATCCAACGAGAACGACAC 11764 ||| | ||||| | || | ||| ||||||||||| ||| |||||||| || Sbjct 1324 CGGGTTAAAGACCGTGAAGGCGATCATCAGTCGCTGGGCGCCGTCCGTGGAGAACGATAC 1383 Query 11765 C 11765 | Sbjct 1384 C 1384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117870876949778