Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1351 122 8e-23 seq4240 116 4e-21 seq3381 111 1e-19 seq3382 107 2e-18 seq8653 104 2e-17 >seq1351 Length=12664 Score = 122 bits (134), Expect = 8e-23 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || ||||| |||||||| ||||| || || | ||||| ||| || Sbjct 4684 ACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCGAGGGTGCGTCCATCCTCA 4625 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || || || || || ||||||| || ||||| ||||| || || |||||||||||| | Sbjct 4624 AGTTGCTTGCCGGCAAAGATCAAACGTTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGG 4565 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | |||| |||||| | | |||||| |||| ||| | || ||| Sbjct 4564 ATCTTGNNCTTGACGTTCTCGATGGTGTCGGATCCCTCGACCTCGAGGGTGATGGTCTTG 4505 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || || || |||||||| Sbjct 4504 CCAGTGAGGGTCTTGACGAAGATCTGCAT 4476 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 126883 TGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATC 126942 ||| || || || | || ||| ||||| || | || ||||| |||||||| || || || Sbjct 5162 TGCACCTCCACGAAGTCTCAATACCAAGTGAAGGGTGGACTCCTTTTGAATGTTATAGTC 5103 Query 126943 GCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGG 127002 ||| | |||||| ||| || ||||| || || || |||| | |||||||| ||||| Sbjct 5102 GCCAAGAGTGCGACCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGG 5043 Query 127003 AGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTC 127062 || || ||||||||||| || || ||||| | |||| |||||| | | ||| Sbjct 5042 TGGGATTCCCTCCTTGTCTTGAATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCCTC 4983 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | || | || ||||| || || || || || || |||||||| Sbjct 4982 AACCTCAAGTGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 4932 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | || ||||| |||||||| ||||| || || | ||||| ||| || Sbjct 4913 CACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCGAGGGTGCGTCCATCCTC 4854 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || || || |||| | |||||||| ||||| || || ||||||||||| Sbjct 4853 AAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGAATACCCTCCTTGTCTTG 4794 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || ||||| | |||| |||||| | | |||||| || | || | || || Sbjct 4793 GATCTTGGCCTTGACGTTCTCGATGGTGTCGGATCCCTCGACCTCCAGAGTGATGGTCTT 4734 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || ||||| || ||||| || ||||| Sbjct 4733 TCCAGTTAGAGTCTTCACAAAGATTTGCAT 4704 >seq4240 Length=2116 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | || ||||| || || |||||||| || | || ||| ||| || Sbjct 1423 ACCAAATGGAGAGTTGACTCCTTCTGGATATTGTAGTCAGAGAGGGTACGACCATCCTCC 1364 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | ||| ||||| || |||| | || ||||| ||||| || || |||||||||||| | Sbjct 1363 AACTGCTTTCCGGCAAAGATGAGACGTTGCTGGTCGGGTGGAATTCCCTCCTTGTCCTGG 1304 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | |||| |||||||| | |||||| || | ||| | || || Sbjct 1303 ATCTTGGCCTTGACGTTCTCGATGGTGTCCGAGCCCTCGACCTCAAGGGTAATAGTCTTA 1244 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || |||||||| ||||||||||| Sbjct 1243 CCAGTGAGTGTTTTTACGAAAATCTGCAT 1215 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | || ||||| || ||||||||||| || | |||||| || || Sbjct 1652 CACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCAGAGAGAGTGCGACCGTCCTC 1593 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| ||||| || |||| | |||||||| ||||| || || |||||||||||| Sbjct 1592 GAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTGTCCTG 1533 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || ||||| | |||| |||||| | | ||||| || | ||| | || || Sbjct 1532 GATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCTTCGACCTCAAGGGTGATGGTCTT 1473 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| || || || |||||||| Sbjct 1472 TCCAGTCAAAGTCTTGACGAAGATCTGCAT 1443 >seq3381 Length=12314 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | ||||| || |||||||| ||||| ||||| | || ||| ||| || Sbjct 1395 ACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGCCAAGAGTACGACCATCCTCG 1336 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || || || || || |||| | || ||||||||||| || || |||||||| || | Sbjct 1335 AGTTGCTTGCCGGCAAAGATGAGACGTTGCTGATCGGGTGGGATACCCTCCTTATCTTGG 1276 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | |||| || |||| || ||| || |||| ||| | || || Sbjct 1275 ATCTTGGCCTTGACGTTCTCGATAGTATCCGAACCCTCAACCTCGAGGGTGATAGTCTTT 1216 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||||| ||| || ||||| || ||||| Sbjct 1215 CCGGTCAAAGTCTTCACAAAGATTTGCAT 1187 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || ||||| || || | |||||| ||| || ||||| || ||| Sbjct 927 GTGGACTCTTTCTGGATGTTGTAGTCACCGAGGGTGCGACCATCCTCGAGCTGCTTGCCA 868 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | |||||||||||||| || || |||||||| || ||| || ||| Sbjct 867 GCAAAGATGAGACGCTGCTGATCGGGTGGGATACCCTCCTTATCTTGGATCTTAGCCTTA 808 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | ||||| | | ||| || || | || | || ||||| |||| ||| Sbjct 807 ACATTTTCAATAGTGTCGGAGCCCTCAACCTCCAGTGTGATGGTCTTGCCAGTCAAAGTC 748 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| || |||||| Sbjct 747 TTAACAAAGATTTGCATG 730 >seq3382 Length=4522 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | || ||||| || || |||||||| || | || ||| ||| || Sbjct 4389 ACCAAATGGAGAGTTGACTCCTTCTGGATATTGTAGTCAGAGAGGGTACGACCATCCTCC 4330 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | ||| ||||| || |||| | || ||||| ||||| || || |||||||||||| | Sbjct 4329 AACTGCTTTCCGGCAAAGATGAGACGTTGCTGGTCGGGTGGAATTCCCTCCTTGTCCTGG 4270 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | ||| | |||||| | | |||||| |||| ||| | || ||| Sbjct 4269 ATCTTGGCCTTGACGTTTTCAATGGTGTCGGATCCCTCGACCTCGAGGGTGATGGTCTTG 4210 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || || || |||||||| Sbjct 4209 CCAGTGAGGGTCTTGACGAAGATCTGCAT 4181 Score = 102 bits (112), Expect = 8e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | || ||||| ||||| || ||||| || | || ||| || || Sbjct 4162 CACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGACCGTCCTC 4103 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 | ||| ||||| || |||| | |||||||| ||||| || || ||||||||||| Sbjct 4102 CAACTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTGTCTTG 4043 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || ||||| | |||| ||| || | || ||| || || | ||| | || || Sbjct 4042 GATCTTGGCCTTGACGTTCTCGATGGTATCGGAACCCTCAACCTCAAGGGTGATGGTCTT 3983 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||||||||||| || || ||||| |||||| Sbjct 3982 TCCGGTCAGAGTCTTGACGAAAATTTGCATG 3952 >seq8653 Length=1535 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || ||||| ||||| || || | || ||| ||| || ||||| || || || | Sbjct 1 CTCCTTCTGAATGTTGTAGTCACCGAGGGTACGACCATCCTCGAGCTGCTTGCCGGCAAA 60 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 ||| | |||||||||||||| || || |||||||| || ||| || ||||| | Sbjct 61 GATGAGACGCTGCTGATCGGGTGGGATTCCCTCCTTATCTTGGATCTTGGCCTTGACGTT 120 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| ||||| | | ||| || |||| ||| | || ||||| || ||||| || || Sbjct 121 CTCGATAGTGTCAGAGCCCTCAACCTCGAGGGTGATAGTCTTGCCAGTGAGAGTCTTCAC 180 Query 127102 AAAAATCTGCAT 127113 ||| |||||||| Sbjct 181 AAAGATCTGCAT 192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475333025486480