Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_011802.1 Length=41941 Score E Sequences producing significant alignments: (Bits) Value seq1687 910 0.0 seq40 605 8e-169 seq501 93.3 1e-14 seq62 86.0 2e-12 >seq1687 Length=800 Score = 910 bits (1008), Expect = 0.0 Identities = 623/702 (89%), Gaps = 0/702 (0%) Strand=Plus/Plus Query 21630 GTGGCGGGGCTATTGCTATAGCATCTGTGTTAATCACTGGCCCCGGTGGTAACGATGGTC 21689 ||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 18 GTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTGGCCCAAGTGGTAACGATGGTC 77 Query 21690 TGGAAGGTGTCAGATACAAACCATATAAGGACGTAGTCGGTGTGTTGACTGTGTGTTATG 21749 ||||||||||||| |||| |||||| || || | || ||||| | |||||| ||| | | Sbjct 78 TGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTATGGACTGTATGTCACG 137 Query 21750 GCCACACCGGAAAAGACATCATGCCTGGTAAAACGTATACCGAAGCAGAATGCAAAGCCC 21809 | || || |||||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct 138 GGCATACAGGAAAAGACATCATGCTCGGTAAAACGTATACCAAAGCAGAATGCAAAGCCC 197 Query 21810 TCCTGAATAAAGACCTTATCACTGTCGCCAGACAAATTAACCCGTACATCAAAGTAGATA 21869 ||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| |||| Sbjct 198 TCCTGAATAAAGACCTTGCCACGGTCGCCAGACAAATTAACCCGTACATAAAAGTTGATA 257 Query 21870 TACCGGAAACAACGCGCGGCGCTCTTTACTCGTTCGTTTACAATGTGGGCGCAGGCAATT 21929 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 258 TACCGGAAACAACGCGCGGCGCTCTTTACTCGTTCGTTTACAACGTGGGCGCTGGCAATT 317 Query 21930 TCAGAACATCGACGCTTCTTCGCAAAATCAATCAGGGTGATATCAAAGGTGCATGTGATC 21989 |||||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||| Sbjct 318 TCAGAACATCGACGCTTCTTCGCAAAATAAACCAGGGCGATATCAAAGGCGCATGTGATC 377 Query 21990 AGCTACGTCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGCCTGATGACTCGTCGTG 22049 ||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||| Sbjct 378 AGCTACGTCGCTGGACATATGCTGGCGGTAAGCAATGGAAAGGTCTCATGACTCGTCGTG 437 Query 22050 AGGTTGAGCGTGATGTCTGTTTGTGGGGTAAGCAATGAGCAGATTAACCTCGATTATCTC 22109 || |||||||||| |||||||||||||| |||||||| |||| ||||| |||||||||| Sbjct 438 AGATTGAGCGTGAAATCTGTTTGTGGGGTCAGCAATGAACAGAGTAACCGCGATTATCTC 497 Query 22110 CGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTATCGTGATAA 22169 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 498 CGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAA 557 Query 22170 CGCCATCACCTACAAAGTCCAGCGCGACACTGTTACTCAAAAGCTGGCGCTGGCGAACGC 22229 |||||| |||||||||| ||||||||||| | | | | ||| |||||||||||| Sbjct 558 CGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGC 617 Query 22230 GACAATTACCGATATGCAAACGCGCCAGCGTGATGTAGCAGAACTTGACGCCAGATACAC 22289 | ||||||| || ||||| | ||||||||||||||| || | ||| || | | |||||| Sbjct 618 GGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCACTGGATGAAAAATACAC 677 Query 22290 AAAGGAGCTTGCTGATGCGAAAGCTGAGAATGATGCTCTTCG 22331 |||||| | ||| ||||||||||||| ||||||||||| || Sbjct 678 GAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATGCTCTGCG 719 >seq40 Length=14228 Score = 605 bits (670), Expect = 8e-169 Identities = 757/1028 (74%), Gaps = 10/1028 (1%) Strand=Plus/Plus Query 13000 CATCACCCGAATATCTCATCAGGCCATTAGCTGGCTAACCGTGCTTCCTATAGGTCTGCG 13059 ||| |||| || |||||||| | ||||| || ||||| |||||||| ||||||| Sbjct 8414 CATTACCCAAAAGCCTCATCAGCACGC-AGCTGATTATCCGTGTTTCCTATACGTCTGCG 8472 Query 13060 GCATGCTTCCAATCACCTTTCCAAAGACAAAAACCCTATTCATTTCATCTCTTTCAATTG 13119 |||| || ||||| ||||| || || | || |||| ||||| || ||| | || || | Sbjct 8473 GCATACTGCCAATAACCTTCCCGAAAATGAACACCCGGTTCATCTCGTCTTTCTCGATCG 8532 Query 13120 GGTCCCAAGCTGAATAACTCTTATTATCAGATATGACCAATAGTTTATCTTTCATCTTCT 13179 ||||||| | ||| || ||||| |||||||| || |||| ||| |||||||||||| | | Sbjct 8533 GGTCCCACGGTGAGTAGCTCTTGTTATCAGAGATAACCAGTAGCTTATCTTTCATCATTT 8592 Query 13180 GGAGCCGCTTAACATGTGCGGTATCGTCATAGAGGAAGGCGTATATCCCATCCCCATCGA 13239 | || ||||| ||||| || || ||||| || || || || || || ||||| || |||| Sbjct 8593 GCAGGCGCTTTACATGGGCTGTGTCGTCGTACAGAAACGCATAGATACCATCACCGTCGA 8652 Query 13240 AGTTTTTGATGCTTACGTCTACAAACAACAAATCTCCTGGTTCAATAGTTCCTGACATGC 13299 | ||| | | | || || |||| || ||| |||||||| || ||||||||||||| Sbjct 8653 AAGATTTAACCGTGATATCAACGAACAGCAGATCACCTGGTTCGATCGTTCCTGACATGC 8712 Query 13300 TATCCCCACGCACATTTATGATGCGGATATTTTCAGCCTTTCTACCATCAAACATGTGTC 13359 | || || ||||| || ||||||||||||||||| ||||| || ||||| |||||||| | Sbjct 8713 TGTCACCGCGCACGTTAATGATGCGGATATTTTCCGCCTTCCTGCCATCGAACATGTGAC 8772 Query 13360 TGGCATCGTCCTGCGAATACTCAACCGAGCGGAGTATTTCCACGAATTCTCGATTGATAA 13419 |||||||| ||| |||||||||||||| || | |||||| || || || ||||| | Sbjct 8773 GAGCATCGTCAAACGAGTACTCAACCGAGCGTAGAACTTCCACAAACTCACGGTTGATGA 8832 Query 13420 CGCCAGGACCCGCGCTTACTTCAAGATCTAGGATATCGAT-TTTAAATGTGTTTGATGAT 13478 | || || || || || ||||| | ||| || | || || || || | | || ||| Sbjct 8833 CACCCGGTCCGGCACTGACTTCTATATCAAGAACGTCAATCTTGAAGTATTTTGAATGGC 8892 Query 13479 GGAGATGC--GTTTATCGGAGTAGTT--CCATCTTTTTTCATAGGACCAATTCCGGTAGA 13534 || | || | || | || | ||| || || ||| |||| || || || || | || Sbjct 8893 TGACA-GCAGGCTTCCCTGA-TTGTTGACCGTCATTTCTCATCGGGCCTATGCCTGATGA 8950 Query 13535 CAACCATTCCGAACTAACACCTAACGCGTTTGCTATTTCAACAATCTTTGTTGACCCACG 13594 | |||||| | | |||||| || || || |||||||||||||| |||||||| || || Sbjct 8951 GAGCCATTCTGTTCGAACACCCAATGCATTAGCTATTTCAACAATTTTTGTTGAGCCGCG 9010 Query 13595 AGCGTTTCCACTTGTCAAACGCCAGATCGTTGGCTGAGCAACGCCTGACGCTTTAGCAAG 13654 ||||| || ||||||| | |||||| || || ||||| ||||| ||||| || ||||| Sbjct 9011 CGCGTTGCCGCTTGTCAGTCTCCAGATTGTGGGTTGAGCTACGCCAGACGCCTTTGCAAG 9070 Query 13655 AGCACCTTGAGACATACCAGCTAGTTCCATTGCCTTGTTGAGACGGTCAGAGAGAGTTTC 13714 ||| ||||||||||| |||| | ||||||| || ||| | || |||| |||||||| Sbjct 9071 AGCGCCTTGAGACATTCCAGATTGTTCCATCGCTAGGTTTAAGCGATCAGCAAGAGTTTC 9130 Query 13715 TTTTTTCATAATATTCAATTTATACGCTTGCGTATTAATGGTCAAAACACGTTTTGCTAT 13774 ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 9131 TTTTTTCATAAGTTTTAATTTATACGCTTGCGTATTGATGGTCAAAACACGTTTTGCTAT 9190 Query 13775 TGCTTTGATTAATACTCATTGCTATTATTTGTTGTGTGTTATACGAAAGGGAATAAGCAA 13834 ||||| | ||||||| ||||||||||||| || || |||| || ||||| || Sbjct 9191 TGCTTGGGTTAATACGCATTGCTATTATTCATTCATTGCAATACCAATAGGAATTGATAA 9250 Query 13835 TGACTAACAAAGCAATACAAAAAGCTGTTGCCATTGCAGGAAGCCAGCAAAAACTCGCCT 13894 |||| || || | || ||| || | ||| |||| || || || ||| || Sbjct 9251 TGACAAATCAAACCATTCAACTCGCAATCAGTATTACAGGTAGTCAAAAACGACTGGCAG 9310 Query 13895 CTTTGTGTGGAGTTAAGCAGCCAACTGTATGGCGTTGGTTACATGGTGGCGGCATTGACG 13954 | | || || || || || || || ||||||||| |||| |||||||| ||||| | Sbjct 9311 ATCTATGCGGTGTAGCCCAACCCACAGTTTGGCGTTGGCTACACGGTGGCGGAATTGATG 9370 Query 13955 CTAAGTATGTGGCAGCAATCGTAAAAGCTACAGGAGGAAGAATTAAAGCCAG-AGAACTT 14013 | ||||| ||| || ||| || || |||| |||||| |||| ||| || Sbjct 9371 CCCGCTATGTAATGAAAATTGTCTCAGCCACTGGTGGAAAGATTAAA-CCAGCAGATATT 9429 Query 14014 CGTCCTGA 14021 ||||| || Sbjct 9430 CGTCCCGA 9437 Score = 89.7 bits (98), Expect = 1e-13 Identities = 68/78 (87%), Gaps = 3/78 (4%) Strand=Plus/Plus Query 4624 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCATATGaaaaaaaTCCCCGCGAGTGCGAG 4683 ||||||||||||||||||||||||||||||||| || ||| |||||| || |||||||| Sbjct 3048 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 3107 Query 4684 GTT--TGTT-ATTGCTGC 4698 | | |||| |||||||| Sbjct 3108 GATGCTGTTCATTGCTGC 3125 >seq501 Length=12468 Score = 93.3 bits (102), Expect = 1e-14 Identities = 97/128 (76%), Gaps = 11/128 (9%) Strand=Plus/Minus Query 3108 CTTATTTTTACT-GTGGGACATATTTGGGACAG----------AAGTACCAAAAATCGAG 3156 || |||||| || ||||||||||||||||||| || | ||||||| ||| Sbjct 10997 CTGATTTTTCCTTGTGGGACATATTTGGGACATCTTCTGCAAAAATTTGCAAAAATTGAG 10938 Query 3157 TCAATTTGTCGAGCATGTTCAGTCAGGTGATTTGGTGCCAGATGAGCATATCTGCGAACC 3216 |||||||| || || || ||||| | || || |||||||| |||||||||| || ||| Sbjct 10937 TCAATTTGACGTGCGTGCTCAGTTAAATGGTTAGGTGCCAGGTGAGCATATCGACGGACC 10878 Query 3217 ATTTCGAT 3224 |||||||| Sbjct 10877 ATTTCGAT 10870 >seq62 Length=1393 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 3027 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 3078 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 25 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 76 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134044653752722