Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_011976.1 Length=43016 Score E Sequences producing significant alignments: (Bits) Value seq1687 199 1e-46 seq501 122 2e-23 seq360 102 2e-17 >seq1687 Length=800 Score = 199 bits (220), Expect = 1e-46 Identities = 207/271 (76%), Gaps = 23/271 (8%) Strand=Plus/Plus Query 40459 ATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 40518 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 472 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 531 Query 40519 TGGGCTGTTAATCATTACCGTGATAACGCCACCGCCTACAAAGAGCAGCGCGATAAA--- 40575 ||||||||||||||||||||||||||||||| ||||||||| |||||||| ||| Sbjct 532 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 591 Query 40576 GCCACA----TCCATC--------------ATCGCTGATATGCAGAAGCGTCAACGTGAT 40617 |||| | | | | || |||| ||||||| ||| || |||||| Sbjct 592 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 651 Query 40618 GTAGCAGAACTCGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 40676 || || | ||| || | | |||||| |||||| | ||| |||| || || || || || Sbjct 652 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 710 Query 40677 AAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 40707 ||| |||| || |||| | ||||||||| Sbjct 711 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 741 >seq501 Length=12468 Score = 122 bits (134), Expect = 2e-23 Identities = 156/212 (74%), Gaps = 15/212 (7%) Strand=Plus/Minus Query 21601 CTTCTAAGCCGTGGGTCGCAGGTTCGAATCCTGCAGGGCGCACCATTATAT-ATCAACTG 21659 |||||||||||| |||| ||||||||||||||| |||||| ||||| || ||||| Sbjct 11078 CTTCTAAGCCGTAGGTCACAGGTTCGAATCCTGTAGGGCGTGCCATTTAATAATCAATCA 11019 Query 21660 GTTA--CGCCTCTTTAATTCCCTCCTTATTTTCCATATGGGACATATTTGTGACATCATC 21717 ||| | || | | || || | |||||| | ||||||||||||| |||||| || Sbjct 11018 CTTATCAACTTCCTCCAGTCGCTGAT--TTTTCCTTGTGGGACATATTTGGGACATCTTC 10961 Query 21718 ------ACT----GAAAATCGAGTCAATTTGCTTCGCGTGTTCCGTTAAATGATTCGGCG 21767 | | ||||| ||||||||||| ||||| || |||||||| || || | Sbjct 10960 TGCAAAAATTTGCAAAAATTGAGTCAATTTGACGTGCGTGCTCAGTTAAATGGTTAGGTG 10901 Query 21768 CAAGGTGAGCATATCGGCGCACCATATCGATG 21799 | |||||||||||||| || ||||| |||||| Sbjct 10900 CCAGGTGAGCATATCGACGGACCATTTCGATG 10869 >seq360 Length=29890 Score = 102 bits (112), Expect = 2e-17 Identities = 206/304 (68%), Gaps = 4/304 (1%) Strand=Plus/Plus Query 27604 TCAGTGGTGTAGCGGTCTTGCCCTGTCTGGTCTTGCCACTTTCTGGTTCTCAGCATTCCC 27663 || |||||||| ||| || || | || || |||||| | ||| | |||| || Sbjct 27282 TCGGTGGTGTATTTGTCCTGACCGGATTGATCGGTCCACTTGCGGGTACGCAGCTGGCCT 27341 Query 27664 TCGAAATAAACCTGATCACCTTTTTTCACATACTGCCCTACGACTTCAGCAAGTTTCCCA 27723 || | || |||||| ||||| || ||||| || ||||||| || ||||| || Sbjct 27342 TCAATGTACACCTGAGAGCCTTTACGCAGATACTCACCAGCGACTTCCGCCAGTTTGCCG 27401 Query 27724 ACTACGGCAACACGATGCCATTCAGTCTGCTCCTTTTGTTCGCCAGTCTGTTTATCTCGC 27783 | | |||| || ||||| || |||||||| || |||||| ||||| || || ||| Sbjct 27402 AACAGCACAACGCGGTGCCACTCGGTCTGCTCTTTCATTTCGCCGGTCTGCTTGTCACGC 27461 Query 27784 CACTGCTCTGATGTAGCGACTGTCAGGTTAGCGAA--CGCCGTCCCTGATGGTGAATAAC 27841 || || || || || | || | ||| |||| ||||| | || ||| || | Sbjct 27462 CAGGATTCGGAAGTTGCCAGCGTGAAGTTGGCGACAGCGCCGCCACT--TGGCATGTAGC 27519 Query 27842 GAACCTCCGGGTCTTGCCCGACCCGGCCTAAGATGATCACCTTATTTACGCCTCTACTAG 27901 | || |||||||| ||||| | || | || |||||||| ||||||||||| || | Sbjct 27520 GTACTTCCGGGTCCTGCCCCAGATTACCGACGAGAATCACCTTGTTTACGCCTCTGCTGG 27579 Query 27902 CCAT 27905 |||| Sbjct 27580 CCAT 27583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137483500679772