Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq4240 104 2e-17 seq3382 100 3e-16 seq13335 93.3 4e-14 >seq4240 Length=2116 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | || | ||| || ||||| ||||| |||||||| || || Sbjct 1444 ATACCTCCACGGAGACGGAGGACCAAATGGAGAGTTGACTCCTTCTGGATATTGTAGTCA 1385 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | ||| ||||| || ||||| || | || | ||||||||||| || Sbjct 1384 GAGAGGGTACGACCATCCTCCAACTGCTTTCCGGCAAAGATGAGACGTTGCTGGTCGGGT 1325 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || || || || || || |||| || | || | |||||| || ||| Sbjct 1324 GGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCCGAGCCCTC 1266 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || |||| || || || || || |||||||| ||||| ||||| Sbjct 1265 GACCTCAAGGGTAATAGTCTTACCAGTGAGTGTTTTTACGAAAATCTGCAT 1215 >seq3382 Length=4522 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | || | ||| || ||||| ||||| |||||||| || || Sbjct 4410 ATACCTCCACGGAGACGGAGGACCAAATGGAGAGTTGACTCCTTCTGGATATTGTAGTCA 4351 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | ||| ||||| || ||||| || | || | ||||||||||| || Sbjct 4350 GAGAGGGTACGACCATCCTCCAACTGCTTTCCGGCAAAGATGAGACGTTGCTGGTCGGGT 4291 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || || || || || || |||| ||| | ||||||||| |||| Sbjct 4290 GGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCGGATCCCTCG 4231 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || ||||| || || || || || || || ||||| Sbjct 4230 ACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 4181 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | ||| | || || || || ||||||||||| || || || Sbjct 4182 ATACCTCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCA 4123 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | || ||||| || ||||| || | || | || |||||||| || Sbjct 4122 GAGAGGGTACGACCGTCCTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGT 4063 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || || ||||| || || |||| || | || | ||| |||||| ||| Sbjct 4062 GGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTATCGGAACCCTC 4004 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || || ||||| ||||| || || ||||||||||| Sbjct 4003 AACCTCAAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAAATTTGCAT 3953 >seq13335 Length=4250 Score = 93.3 bits (102), Expect = 4e-14 Identities = 345/536 (64%), Gaps = 16/536 (3%) Strand=Plus/Minus Query 124143 TGGGACTGGAGCGTTTTAAAACAACGCATA-TCGACGCACGGTTTGCGTAACTCGCTGTT 124201 |||||||||| || | || | ||||| |||| | ||| |||| ||| |||| Sbjct 1602 TGGGACTGGACCGGACTGAAGAAGCGCATCGTCGAGACT-GGTCTGCGCAACAGTTTGTT 1544 Query 124202 GGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGA 124261 | | || ||||| || ||| | || | ||||| | || ||||||||| | ||||| Sbjct 1543 GATTGCTCCAATGCCCACCGCATCGACCTCCCAAATCCTCGGCAACAACGAAGCTTTCGA 1484 Query 124262 GCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGATAAA 124321 ||| | ||| | ||| | ||| || || ||| | ||||| || || || | || Sbjct 1483 GCCATACACCAGCAACATTTACAGTCGTCGTGTGCTTGCCGGTGAGTTCACCGTCGTCAA 1424 Query 124322 TCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTACGATGAAAAC----ATGCGCA 124377 | || || || | |||||| |||| | | ||| || | | ||| | Sbjct 1423 CAAGCAGCTGCTGCAGGACTTGATGGCACTCGGTCTGTG----GACACCCGAGATGAAGA 1368 Query 124378 ACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCGATTCCGGAACACGTCA 124437 |||| || ||||| | |||| | ||| |||| ||| || || ||| || | | Sbjct 1367 ACGAGATCATTGCCAACCGTGGTTCGATCCAGGCGATCGATTCCATCCCCGAAGACCTGA 1308 Query 124438 AGCAACTGTACAAAACCGTGTGGGAAATGAAAAATAAACG---ATTAATTGAAATGGCCG 124494 | | |||||||| ||||||||||| || | | || | | || || ||||| | Sbjct 1307 AAGAGCTGTACAAGACCGTGTGGGA---GATCCGTCAGCGCACACTGATCGATATGGCGG 1251 Query 124495 TCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCGGAACCCA 124554 |||||| || || | || || |||||||| || ||||||||| | || || || | Sbjct 1250 CCGACCGTGGTGCTTTCATCGACCAAAGTCAGAGCTTCAACGTGTTTATCGCCGAGCCAA 1191 Query 124555 CCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGCGGACTCAAAACGGGCA 124614 || ||| | ||| || ||| | | || |||| | ||||| || || |||| Sbjct 1190 GCTTTGCCAAGCTCACCTCGATGCACTTTTATGCCTGGAAGAAGGGACTGAAGACTGGCA 1131 Query 124615 TGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGACAAA 124670 |||| ||| | | |||| | | || ||||| ||||| || || ||||| ||| || Sbjct 1130 TGTACTACCTGCGTACCAGAGCCGCCGCCGACGCCATCCAGTTCACCGTGGACCAA 1075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451843716320920