Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_012743.2 Length=62715 Score E Sequences producing significant alignments: (Bits) Value seq11225 116 1e-21 seq360 93.3 2e-14 >seq11225 Length=5908 Score = 116 bits (128), Expect = 1e-21 Identities = 210/303 (69%), Gaps = 7/303 (2%) Strand=Plus/Minus Query 9119 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCC 9178 |||||||||||| || ||||||||||| ||||| |||||||||| ||||||| ||| Sbjct 5310 CGTCAACAAAGTGATTCTCGTCGGCAACGCCGGCGGCGACCCGGAAGTCCGCTACACCCC 5251 Query 9179 GAGCGGCGACGCAATCTCCAATATCCGTCTCGCGACGACCGATCGCTACAAGGACAAGGC 9238 || |||| |||| | | || || || || || | ||| ||| || || ||| Sbjct 5250 GAACGGCAACGCCGTAACGAACATAACCCTGGCCACCAGCGAAAGCTGGAAAGATAAGCA 5191 Query 9239 GAGCGGCGAGTTCAAGGAAGTGACCGAGTGGCACCGCGTCGCTTTCTTCGGCCGCCTCGC 9298 || |||| || |||| ||||||||||||||||| | ||||||||| |||| Sbjct 5190 GACCGGCCAGCAGCAGGAGCGTACCGAGTGGCACCGCGTAGTGTTCTTCGGCAAGATCGC 5131 Query 9299 CGAGATCGTCGACGAGCACCTTCG-CAAGGGCGCATCGGT-CTACATCGAGGGGCGCATC 9356 ||| |||| | ||| | || || ||||| || | || |||| |||| || || Sbjct 5130 CGAAATCGCGGGTGAGTATCTGCGAAAAGGGAGC--CAGTGCTACGTCGAAGGCACTCTC 5073 Query 9357 AAGACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGCTACACGACCGAGATCGTCGCC 9416 || || |||| ||| || ||| | | |||||||| ||||||||||||| | Sbjct 5072 CGCACCCGCGAGTG---GGAAAAAGACGGAGTGAAACGCTACACCACCGAGATCGTCGTC 5016 Query 9417 GAC 9419 ||| Sbjct 5015 GAC 5013 >seq360 Length=29890 Score = 93.3 bits (102), Expect = 2e-14 Identities = 216/327 (66%), Gaps = 9/327 (3%) Strand=Plus/Minus Query 9119 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCC 9178 ||| ||||| || || |||||||| ||||| || ||||||||| |||||| | || Sbjct 27569 CGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCC 27510 Query 9179 GAGCGGCGACGCAATCTCCAATATCCGTCTCGCGACGACCGATCGCTACAAGGACAAGGC 9238 || |||| ||| || |||| || || || || |||| || |||||| Sbjct 27509 AAGTGGCGGCGCTGTCGCCAACTTCACGCTGGCAACTTCCGAATCCTGGCGTGACAAGCA 27450 Query 9239 GAGCGGCGAGTTCAAGGAAGTGACCGAGTGGCACCGCGTCGCTTTCTTCGGCCGCCTCGC 9298 || |||||| | || || |||||||||||||||||| | | |||||| || || Sbjct 27449 GACCGGCGAAATGAAAGAGCAGACCGAGTGGCACCGCGTTGTGCTGTTCGGCAAACTGGC 27390 Query 9299 CGAGATCGTCGACGAGCACCTTCGCAAGGGCGCATCGGTCTACATCGAGGGGCGCATCAA 9358 || ||| | ||| | || || || ||| | ||| ||||| || || | | Sbjct 27389 GGAAGTCGCTGGTGAGTATCTGCGTAAAGGCTCTCAGGTGTACATTGAAGGCCAGCTGCG 27330 Query 9359 GACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGCTACACGACCGA---------GAT 9409 || || |||||| ||||||||||| ||||| ||||| ||||| || Sbjct 27329 TACCCGCAAGTGGACCGATCAATCCGGTCAGGACAAATACACCACCGAAGTGGTGGTGAA 27270 Query 9410 CGTCGCCGACAGGATGCAGATGCTCGG 9436 ||| | || || ||||||||||| || Sbjct 27269 CGTGGGCGGCACCATGCAGATGCTGGG 27243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200494202937372