Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq3523 159 9e-35 seq6347 138 3e-28 seq85 86.0 2e-12 seq11225 80.6 7e-11 >seq3523 Length=12220 Score = 159 bits (176), Expect = 9e-35 Identities = 254/362 (70%), Gaps = 3/362 (1%) Strand=Plus/Minus Query 8755 CGCGAATGCGGCCGGCTCGGGATGATTGTCGTTGACTACCTGCAGCTGATGTCGGGTGAC 8814 ||||| |||| | |||| ||||| | | |||||||||||||||||| || ||| | Sbjct 5689 CGCGAGCACGGCGGCATCGGACTGATTATGATCGACTACCTGCAGCTGATG-CGCGTGCC 5631 Query 8815 GGCGGCGGATCTGAAATGCGGGCCACCGAGGTCGCCGAAATATCGCGCGCACTCAAACAA 8874 | || || || | || || ||| | |||||||| || ||| | || || Sbjct 5630 GTCGCTC--TCCGACAACCGTACCCTTGAGATTGCCGAAATCTCCCGCTCGCTGAAGGCG 5573 Query 8875 ATTGCGAAGGAACTCGACGTTCCGATCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAG 8934 | ||||| || || | || ||| | | ||||||||||||||||| || ||| ||| Sbjct 5572 CTGGCGAAAGAGCTGCAGGTGCCGGTGGTGGCGCTGTCGCAGCTTAACCGCTCGCTGGAG 5513 Query 8935 AATCGCCCAAACAAGCGGCCCGTCATGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAG 8994 | ||| | | ||||| || |||| ||||| ||||| ||||| || | ||||| ||| Sbjct 5512 CAGCGCGCCGATAAGCGCCCGGTCAACTCCGACCTGCGTGAGTCCGGCTCTATCGAACAG 5453 Query 8995 GATGCCGACGTGATCCTCTTTATCTACCGCGATGAGGTCTATAACCCCGACAGCGCAGAT 9054 ||||||||| | ||| | || || ||||| |||||||||||| || |||||| | Sbjct 5452 GATGCCGACTTAATCATGTTCATTTACCGTGATGAGGTCTATCACGAGAACAGCGATCTT 5393 Query 9055 CGCGGTACGGCCGAAATCATCATTGCGAAGCAGCGAAACGGGCCGATTGGCACCGTACGG 9114 || | || ||||| ||||||| || || || ||||| ||||| |||||||| || Sbjct 5392 AAAGGCATCGCGGAAATTATCATTGGTAAACAACGTAACGGCCCGATCGGCACCGTGCGA 5333 Query 9115 CT 9116 || Sbjct 5332 CT 5331 >seq6347 Length=2804 Score = 138 bits (152), Expect = 3e-28 Identities = 227/325 (70%), Gaps = 8/325 (2%) Strand=Plus/Plus Query 8788 GACTACCTGCAGCTGATGTCGGGTGACGG----CGGCGGATCTGAAATGCGGGCCACCGA 8843 |||||||||||| ||||| | | | ||| | |||| ||| | ||| ||| ||| Sbjct 20 GACTACCTGCAGTTGATG-CAGATCCCGGGCTCCAGCGG---TGACAGCCGGACCAACGA 75 Query 8844 GGTCGCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCAT 8903 | | |||| || || ||| | | ||| | || |||||| || || ||| | | Sbjct 76 GATTTCCGAGATTTCCCGCTCGTTGAAAGCCCTGGCCAAGGAATTCAACTGCCCGGTGGT 135 Query 8904 CGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATGTC 8963 || ||||||||||| || ||| || ||| | || || ||||| || || ||| || Sbjct 136 TGCCCTGTCGCAGCTCAACCGATCTCTTGAGCAGCGTCCGAACAAACGCCCGATCAACTC 195 Query 8964 CGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACCG 9023 ||| |||| || || || ||||||||||||||||| ||||||||| | || | ||||| Sbjct 196 CGACTTGCGGGAATCCGGAGCGATCGAGCAGGATGCTGACGTGATCATGTTCGTATACCG 255 Query 9024 CGATGAGGTCTATAACCCCGACAGCGCAGATCGCGGTACGGCCGAAATCATCATTGCGAA 9083 || ||||| ||| |||| || | || || || | || |||||||| || | || Sbjct 256 GGACGAGGTGTATCACCCGGAGACCGAGCATAAAGGCATCGCTGAAATCATTATCGGTAA 315 Query 9084 GCAGCGAAACGGGCCGATTGGCACC 9108 ||||| |||||||| || |||||| Sbjct 316 ACAGCGTAACGGGCCAATCGGCACC 340 >seq85 Length=367292 Score = 86.0 bits (94), Expect = 2e-12 Identities = 135/187 (72%), Gaps = 6/187 (3%) Strand=Plus/Plus Query 8846 TCGCCGAAAT-ATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATC 8904 || ||||||| | | || || |||||| ||| ||||||||| || ||||||||| Sbjct 201033 TCACCGAAATCACCACGGGC-CTCAAAGCGCTTGGCAAGGAACTCAACACGCCGATCATC 201091 Query 8905 GCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCA--TGT 8962 |||||||| ||||| || | | || | ||| | ||||||| |||| || | | Sbjct 201092 GCGCTGTCACAGCTCTCCCGTCAGGTGGAAAGCCGCGAAGACAAGCG-CCCG-CAGCTCT 201149 Query 8963 CCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACC 9022 |||| ||||| || || || ||||||||||||| ||||||||| | |||| | || | Sbjct 201150 CCGACCTGCGTGAATCCGGGTCGATCGAGCAGGACGCCGACGTGGTGATCTTCGTTTATC 201209 Query 9023 GCGATGA 9029 |||| || Sbjct 201210 GCGACGA 201216 >seq11225 Length=5908 Score = 80.6 bits (88), Expect = 7e-11 Identities = 106/147 (72%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 8900 TCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCA 8959 |||||||||| |||||| | || | ||| | || || |||||||| || || | Sbjct 1539 TCATCGCGCTATCGCAGTTGTCCCGCCAGTGTGAGCAGCGGCCCAACAAGCGCCCTGTGA 1598 Query 8960 TGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCT 9019 | || |||| ||||| || |||||||||||||| || ||| | ||| | || ||| Sbjct 1599 ACGCAGACTTGCGGGAGTCCGGCGCGATCGAGCAGGACGCGGACATCATCATGTTCGTCT 1658 Query 9020 ACCGCGATGAGGTCTATAACCCCGACA 9046 | || || |||||||| ||||| |||| Sbjct 1659 ATCGAGACGAGGTCTACAACCCGGACA 1685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127502847272892