Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_013059.1 Length=40975 Score E Sequences producing significant alignments: (Bits) Value seq1687 199 1e-46 seq360 102 2e-17 seq40 87.8 5e-13 >seq1687 Length=800 Score = 199 bits (220), Expect = 1e-46 Identities = 207/271 (76%), Gaps = 23/271 (8%) Strand=Plus/Plus Query 38418 ATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 38477 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 472 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 531 Query 38478 TGGGCTGTTAATCATTACCGTGATAACGCCACCGCCTACAAAGAGCAGCGCGATAAA--- 38534 ||||||||||||||||||||||||||||||| ||||||||| |||||||| ||| Sbjct 532 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 591 Query 38535 GCCACA----TCCATC--------------ATCGCTGATATGCAGAAGCGTCAACGTGAT 38576 |||| | | | | || |||| ||||||| ||| || |||||| Sbjct 592 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 651 Query 38577 GTAGCAGAACTCGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 38635 || || | ||| || | | |||||| |||||| | ||| |||| || || || || || Sbjct 652 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 710 Query 38636 AAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 38666 ||| |||| || |||| | ||||||||| Sbjct 711 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 741 >seq360 Length=29890 Score = 102 bits (112), Expect = 2e-17 Identities = 206/304 (68%), Gaps = 4/304 (1%) Strand=Plus/Plus Query 25488 TCAGTGGTGTAGCGGTCTTGCCCTGTCTGGTCTTGCCACTTTCTGGTTCTCAGCATTCCC 25547 || |||||||| ||| || || | || || |||||| | ||| | |||| || Sbjct 27282 TCGGTGGTGTATTTGTCCTGACCGGATTGATCGGTCCACTTGCGGGTACGCAGCTGGCCT 27341 Query 25548 TCGAAATAAACCTGATCACCTTTTTTCACATACTGCCCTACGACTTCAGCAAGTTTCCCA 25607 || | || |||||| ||||| || ||||| || ||||||| || ||||| || Sbjct 27342 TCAATGTACACCTGAGAGCCTTTACGCAGATACTCACCAGCGACTTCCGCCAGTTTGCCG 27401 Query 25608 ACTACGGCAACACGATGCCATTCAGTCTGCTCCTTTTGTTCGCCAGTCTGTTTATCTCGC 25667 | | |||| || ||||| || |||||||| || |||||| ||||| || || ||| Sbjct 27402 AACAGCACAACGCGGTGCCACTCGGTCTGCTCTTTCATTTCGCCGGTCTGCTTGTCACGC 27461 Query 25668 CACTGCTCTGATGTAGCGACTGTCAGGTTAGCGAA--CGCCGTCCCTGATGGTGAATAAC 25725 || || || || || | || | ||| |||| ||||| | || ||| || | Sbjct 27462 CAGGATTCGGAAGTTGCCAGCGTGAAGTTGGCGACAGCGCCGCCACT--TGGCATGTAGC 27519 Query 25726 GAACCTCCGGGTCTTGCCCGACCCGGCCTAAGATGATCACCTTATTTACGCCTCTACTAG 25785 | || |||||||| ||||| | || | || |||||||| ||||||||||| || | Sbjct 27520 GTACTTCCGGGTCCTGCCCCAGATTACCGACGAGAATCACCTTGTTTACGCCTCTGCTGG 27579 Query 25786 CCAT 25789 |||| Sbjct 27580 CCAT 27583 >seq40 Length=14228 Score = 87.8 bits (96), Expect = 5e-13 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 21092 CATTTCTTGTCTCCATAAAACAAAACTCGCCGTAGCGAGTTCAGATAAAAGAAAACCTCG 21151 ||||| | ||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 3038 CATTTATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCG 3097 Query 21152 ACTGTG 21157 | ||| Sbjct 3098 TCAGTG 3103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130954489909438