Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq19281 141 1e-28 seq11521 132 6e-26 seq24644 116 5e-21 seq13335 116 5e-21 seq271 107 2e-18 seq3533 100 3e-16 seq26376 86.0 8e-12 seq3843 84.2 3e-11 seq1043 84.2 3e-11 seq4933 82.4 9e-11 >seq19281 Length=570 Score = 141 bits (156), Expect = 1e-28 Identities = 190/262 (73%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 117018 GTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACT 117077 ||||||| | ||| || || || || |||| ||||| | ||||||| | ||||| | Sbjct 98 GTGGATGGCGACACCGATGCCACCAGCAGACTTGGAGATGAGAGCGCACTGCTTGAGAGT 157 Query 117078 GCCGTAGATCCCATCGATCGAGTCACCCTT-ATTTGCGATGAGGAAGCAGCTCGACATTT 117136 | ||||||| || ||||||||||| |||| || || || ||||||||| |||||||| Sbjct 158 GTCGTAGATGCCCTCGATCGAGTCCTCCTTCATCTG-GACGAGGAAGCACGACGACATTT 216 Query 117137 GTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGG 117196 | || | || || ||||||||||| |||||||| || ||||| |||||| || || | Sbjct 217 GAGGGATGGGAGTGCCAGCGTTGAACAGGGTTGGCGTGGCGTGAGTGAACAGACGCTGCG 276 Query 117197 ACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGA 117256 | | | | |||||| | | | | | |||||| ||||| || || || |||| Sbjct 277 AGAGCAGGTTGTAGGTGTGGATGGCGGCATCAATGTCGGTGCCGTGGATGCCAATCGAGA 336 Query 117257 CCCGCATAAACATGTATTGGGG 117278 | ||||| | ||||| |||||| Sbjct 337 CACGCATCAGCATGTGTTGGGG 358 >seq11521 Length=1534 Score = 132 bits (146), Expect = 6e-26 Identities = 252/368 (68%), Gaps = 6/368 (2%) Strand=Plus/Plus Query 176609 GGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGAACCATCGTTATCC 176668 ||||| |||| ||| |||| |||| || | |||||| ||||| |||||||||| ||| Sbjct 322 GGCCAAAAGTGGTGAATCAAGTTGATGAGCAAACCCTTGATGTGGGAACCATCGTGATCT 381 Query 176669 GCATCCGTCATAATCATGAGCCGACCATAGCGAAGCTCGGAAACATCTTGATAATCCTTA 176728 ||| ||||| ||||| || | || ||||| ||| || || | || ||||| Sbjct 382 TGATCAGTCATGATCATCAGATGGCCGTAGCGGAGCGACTTGACGTCGTCGTACTCCTTG 441 Query 176729 CCTTGTTGAAGACCCAAAATCTTCTTGAGATCATTGAACTCTTGGTTTGATGT-GAGTTG 176787 || || || ||||||| || | | | |||| ||||| |||||| | || | Sbjct 442 CCGTGCTGCAGACCCATGATGGTGACAATGTTGTTGATCTCTTCGTTTGACATTGAATCA 501 Query 176788 CGCCA--CTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCGTAG 176845 || |||| || || ||||| ||| || ||||||||| |||||| Sbjct 502 CGGGTGGCTGAC---TCACGCACATTCAGCAGCTTACCCTTGAGAGGGAAGCATCCGTAG 558 Query 176846 TGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCC 176905 || || | || |||||| || ||| || ||||| || ||||| || ||||| ||||| Sbjct 559 TGGTCCCATCCCACCACACTGATACCGGCGACTGCCAGAGTCTTGGCAGAATCTCCCTCT 618 Query 176906 GTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAAC 176965 |||| ||| | ||||||| | |||| ||||| || ||| ||| || ||||||||| Sbjct 619 GTCAAGATCAATGTACACTCGTCTGATTTGGCCGTTCCTGCCAAGTTTGCTTCGTCCAAC 678 Query 176966 TTGGGAAT 176973 ||||| || Sbjct 679 TTGGGTAT 686 >seq24644 Length=724 Score = 116 bits (128), Expect = 5e-21 Identities = 261/385 (68%), Gaps = 14/385 (4%) Strand=Plus/Plus Query 12689 CACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAAT 12748 |||| ||||| ||| || |||||||| ||||| || || ||| ||| ||||| || Sbjct 149 CACGCCGATCTGACGGTCGAAGCGACCGGGGCGCAGCAGCGCGGGGTCGAGGATGTCGGG 208 Query 12749 GCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTT---ATCGAAGCCATCCATCTC 12805 ||||| ||||||||||| |||||| | || |||| |||||||| |||||||| Sbjct 209 ACGGTTGGTCGCCGCGAT---CACGATGACGTTCGCGTTCGGGTCGAAGCCGTCCATCTC 265 Query 12806 AGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATT--CG-CGGGCATACCACCCGC 12862 || | || |||| ||| || || || ||||| || || || ||| ||| || Sbjct 266 GACCAGCATCTGGTTGAGGGTCTGCTCGCGCTCATCGTTGCCGCCGCCCAT---ACCGGC 322 Query 12863 ACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTC 12922 | ||| || ||||||||||| || ||||| ||||| | ||| || ||| || Sbjct 323 GCCGCGGTGACGGCCGACGGCGTCGATCTCGTCGATGAAGATGATGGCGGGCGCATTCTC 382 Query 12923 ACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCAC 12982 ||| | |||| || ||||| | ||| ||||| || || |||||||| || Sbjct 383 CTTGGCCTGGCCGAAGAGGTCGCGCACGCGAGAGGCGCCGACGCCGACGAACATCTCGAC 442 Query 12983 AAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGG 13041 || | || ||| | || | | ||| ||| || | || || |||| ||| |||| Sbjct 443 GAAGTCGGAACCGG-AGATGGAGTAGAACGGGGCGCCTGCCTCGCCGGCGACGGCGCGGG 501 Query 13042 CGAGGAGGGTCTTCCCCGTCCCTGG 13066 ||||||| ||||| || || || || Sbjct 502 CGAGGAGCGTCTTGCCGGTTCCGGG 526 >seq13335 Length=4250 Score = 116 bits (128), Expect = 5e-21 Identities = 298/450 (66%), Gaps = 8/450 (2%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || ||||||||||| || ||||| || |||| |||||||||||| | ||||| |||| Sbjct 1118 CGCAGGTAGTACATGCCAGTCTTCAGTCCCTTCTTCCAGGCATAAAAGTGCATCGAGGTG 1177 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | ||||| | |||| | || || | ||| | || || ||| |||||||| Sbjct 1178 AGCTTGGCAAAGCTTGGCTCGGCGATAAACACGTTGAAGCTCTGACTTTGGTCGATGAAA 1237 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTG 115737 || || || ||||||||||| |||| | ||| |||||||| || || Sbjct 1238 GCACCACGGTCGGCCGCCATATCGATCAGTGTGCGCTGACGGATCTCCCACACGGTCTTG 1297 Query 115738 TAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTG 115797 || || | || | || || ||||| |||| ||||| || |||| ||| Sbjct 1298 TACAGCTCTTTCAGGTCTTCGGGGATGGAATCGATCGCCTGGATCGAACCACGG---TTG 1354 Query 115798 ACCATGAGATC---CTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACG 115854 | |||| || |||||| || || ||| ||||| | | | | |||| || Sbjct 1355 GCAATGATCTCGTTCTTCATCTCGGGTGTCCACAGACCGAGTGCCATCAAGTCCTGCAGC 1414 Query 115855 AGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTC 115914 || ||||| ||||| || |||||||| || || || | || |||||| | Sbjct 1415 AGCTGCTTGTTGACGACGGTGAACTCACCGGCAAGCACACGACGACTGTAAATGTTGCTG 1474 Query 115915 GTGTATGGCTC-AAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCAT 115973 ||||||||||| ||||| || ||||| || | |||||||| || || || |||||||| Sbjct 1475 GTGTATGGCTCGAAAGC-TTCGTTGTTGCCGAGGATTTGGGAGGTCGATGCGGTGGGCAT 1533 Query 115974 GGGTGCCATGAGAAGGCTGTTGCGGAGACC 116003 || || || | | |||||||| ||||| Sbjct 1534 TGGAGCAATCAACAAACTGTTGCGCAGACC 1563 >seq271 Length=183270 Score = 107 bits (118), Expect = 2e-18 Identities = 287/431 (67%), Gaps = 6/431 (1%) Strand=Plus/Plus Query 12639 CGGGCGTGGACACCCAAAATCTTCTCGCGTCCGCGCACA-CTGGGTAGGGACACGGTGAT 12697 ||||| || || || ||||| ||||| ||| || | || | ||| ||| || Sbjct 17902 CGGGCATGAACCTTCAGGATCTTTTCGCGGCCGGTAACGTCCGGATTGGG-CACCACGAC 17960 Query 12698 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 12757 || ||| ||||| || || || || || | ||| || || | ||| ||||| || Sbjct 17961 CTGACGGTCAAAACGGCCCGGACGCAGCAAGGCCGGATCGAGAACATCGGGACGGTTGGT 18020 Query 12758 CGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTG 12817 ||| ||||| | | || ||| | | ||||| ||||||||||| || || || Sbjct 18021 CGCAGCGATCAGGATGACGCCTTCATTGGCCTCGAAACCATCCATCTCGACCAGCAGCTG 18080 Query 12818 ATTGATGGTTTGTTCACGTTCATCATTCGCGG-GCATACCACCCGCACTGCGTTGCTTAC 12876 || | || ||||| ||||| ||||| || || | ||| || | ||| || | Sbjct 18081 GTTCAGCGTCTGTTCGCGTTCGTCATTGCCGCCGCCCAG-ACCGGCGCCGCGATGACGGC 18139 Query 12877 CGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAA 12936 |||| || || |||||||| ||||| | ||| || ||| ||| | || ||| | Sbjct 18140 CGACCGCATCGATTTCGTCGATGAAGATGATGCAGGGTGCATTCTTCTTCGCCTGTTCGA 18199 Query 12937 AGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGG 12996 | || || ||||| | | ||||||||||| || ||||| || || || | || ||| Sbjct 18200 ACATGTCACGCACACGCGATGCACCGACACCGACGAACATTTCAACGAAGTCGGAACCGG 18259 Query 12997 AACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTC 13055 | || | || ||| || || |||| |||||| |||||||| || || || || ||||| Sbjct 18260 -AGATGGTGAAGAACGGCACATTGGCTTCACCGGCGATGGCGCGCGCCAGAAGCGTCTTA 18318 Query 13056 CCCGTCCCTGG 13066 || || || || Sbjct 18319 CCGGTACCGGG 18329 >seq3533 Length=1137 Score = 100 bits (110), Expect = 3e-16 Identities = 148/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| |||||||||||||| ||| || || || || ||| || || Sbjct 952 AGCAAAGTCGCAGTGTAGACCCTCGTCACGACTGATCAGCTCGTTGGAAAAGGTAAGGCC 893 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 |||||| | ||||| |||||||||||| | || |||||||| ||| ||||||||| Sbjct 892 TGGCATTAAACCCCTTTTCTTCAACCAGTAGATGGCACAAAAGCTGCCGCTGAAGAAGAT 833 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAA 127698 ||||| || || || || | | ||| ||||| || || | || || || | Sbjct 832 ACCCTCAACCGCAGCAAATGCCACCAAACGTTCGGCGAATGAACAAGAGTTGGT---GAT 776 Query 127699 CCACTTCATCGCCCACTGTGCCTTTTTCT 127727 ||| || |||||||| |||||| |||| Sbjct 775 CCAGCGCAGCGCCCACTCTGCCTTCTTCT 747 >seq26376 Length=503 Score = 86.0 bits (94), Expect = 8e-12 Identities = 117/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 44046 TATACCGAATTCTATTGGAAGATCAACCTCCACAACCTCATGCACTACCTCCATCTTCGT 44105 || ||||| | || ||||||||| |||| |||||||| | |||| ||| | ||| ||| Sbjct 498 TACACCGAGTGGTACTGGAAGATCGACCTGCACAACCTGTTCCACTTCCTTCGTCTGCGT 439 Query 44106 ATGGACGATCACGCCCAGAAGGAGATCAGGGAGTACGCGAATGCGATCTTTGATCTGGTC 44165 |||||| ||| |||||||||||||| | || || || || || |||| | ||| || Sbjct 438 ATGGACTCGCACTCCCAGAAGGAGATCCGTGACTATGCCAACGCCATCTACGCCCTGATC 379 Query 44166 GAACCCCTCGCACCAGTGACGATG-GAAGCGTTCAAGGACT 44205 | || ||| || || | ||| || || |||| ||||| Sbjct 378 AAGCCAATCGTGCCCCTGGC-ATGCGAGGCATTCATGGACT 339 >seq3843 Length=4024 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 10711 GGGAACCTCAACGCCGAGAGGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGG 10770 || ||| | || ||| || | || ||||| |||||||||||||| || || || |||||| Sbjct 3523 GGTAACTTGAATGCCAAGCGTGATTGGGGTCACGCCAAGGACTACGTCGAGGCAATGTGG 3582 Query 10771 CTCGTACTCCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCC 10830 | | ||||| ||||| || | ||||| | |||| | || || || ||||| ||||| Sbjct 3583 TTGATGCTCCAGCAAGAGAAGCCAGACGACTTTGTCATTGCTACTGGTGAGACTCACTCG 3642 Query 10831 GTCAGGGAGTT 10841 || | ||||| Sbjct 3643 GTTCGTGAGTT 3653 >seq1043 Length=1979 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| | |||||||||||| ||| || || |||||||| ||| || Sbjct 219 GCAAAGTCGCAGTGCAAACCCTCGTCACGACTGATCAGCTCGTTCGAGAACGACAAGCCG 278 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||| | ||| |||||||| | ||| || |||| || || |||| |||||||| Sbjct 279 TGCATTAAACCGCGCTTCTTGAGCCAAAAGATCGAGCAGAAACTGCCACTAAAGAAGATA 338 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCG 127683 ||||| ||| || || || | | ||||||||| || ||||| Sbjct 339 CCCTCGACAGCGGCAAAGGCGACCAAACGCTCGGCGAATGAGCG 382 >seq4933 Length=3897 Score = 82.4 bits (90), Expect = 9e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 12872 CTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAAC 12931 ||| || || | |||||| || || ||||||| ||| || || | || | ||| | Sbjct 423 CTTTCCTACCGAGTCAATCTCATCGATGAAAATGATGCATGGCTCCTTGGACCTGGCGAG 364 Query 12932 TTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGC 12991 ||||| | || ||||| | ||| ||||||||||| || | |||| | || | | Sbjct 363 ATCAAACAACTCGCGCACACGCTTTGCACCGACACCAACGTATTTCTCGTCGAAGCTAGA 304 Query 12992 GGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 13051 | | | | || |||||| ||| | ||||| |||||||| || ||||||||||| Sbjct 303 GCCAGTGGTGTAGAGGAAGGGAACGCCCGCCTCACCTGCGATGGCACGTGCGAGGAGGGT 244 Query 13052 CTTCCCCGTCCCTGGTTTCCCCG 13074 ||| ||||| ||||| | |||| Sbjct 243 CTTACCCGTTCCTGGCTCGCCCG 221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613290731653320