Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq13335 136 6e-27 seq6392 100 5e-16 seq3533 95.1 2e-14 >seq13335 Length=4250 Score = 136 bits (150), Expect = 6e-27 Identities = 324/487 (67%), Gaps = 2/487 (0%) Strand=Plus/Plus Query 203842 GTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGT 203901 |||||| |||||||| ||||||| |||| | ||| | | ||| ||||||||||| || Sbjct 1078 GTCCACGGTGAACTGGATGGCGTCGGCGGCGGCTCTGGTACGCAGGTAGTACATGCCAGT 1137 Query 203902 CTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTC 203961 ||| || ||||||| ||| | || | |||||| || | || ||| | | | || || Sbjct 1138 CTTCAGTCCCTTCTTCCAGGCATAAAAGTGCATCGAGGTGAGCTTGGCAAAGCTTGGCTC 1197 Query 203962 GGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCAT 204021 ||| || | ||| | ||| |||||||||||||||| | || || || ||||| Sbjct 1198 GGCGATAAACACGTTGAAGCTCTGACTTTGGTCGATGAAAGCACCACGGTCGGCCGCCAT 1257 Query 204022 ATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTTG 204081 || ||| | || ||| ||||||||||| |||||| ||| ||| | || || Sbjct 1258 ATCGATCAGTGTGCGCTGACGGATCTCCCACACGGTCTTGTACAGCTCTTTCAGGTCTTC 1317 Query 204082 AGGCACATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCATCAGTCTC-ATCCTCGTCT 204140 || | || || | |||||| || || ||| || | |||| || || ||| Sbjct 1318 GGGGATGGAATCGATCGCCTGGATCGAACCACGGTTGGCAATGA-TCTCGTTCTTCATCT 1376 Query 204141 CCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAA 204200 | ||||| || | |||| ||| ||| ||| || ||||| || | Sbjct 1377 CGGGTGTCCACAGACCGAGTGCCATCAAGTCCTGCAGCAGCTGCTTGTTGACGACGGTGA 1436 Query 204201 AGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGT 204260 | || |||| ||||| | || || | | |||| ||||| |||| ||||| || |||| Sbjct 1437 ACTCACCGGCAAGCACACGACGACTGTAAATGTTGCTGGTGTATGGCTCGAAAGCTTCGT 1496 Query 204261 TGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGC 204320 ||||||||| || || | ||| || |||||||| ||||| | | || ||||| Sbjct 1497 TGTTGCCGAGGATTTGGGAGGTCGATGCGGTGGGCATTGGAGCAATCAACAAACTGTTGC 1556 Query 204321 GCACACC 204327 ||| ||| Sbjct 1557 GCAGACC 1563 >seq6392 Length=4631 Score = 100 bits (110), Expect = 5e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 203842 GTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGT 203901 ||| || |||||||| ||||| | | || | ||| |||||| ||||||||||||||| Sbjct 3959 GTCGACAGTGAACTGGATGGCATCAGCCGCTGCTCTGGTTCTCAAATAGTACATGCCGGT 4018 Query 203902 CTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTC 203961 ||| || ||||||| ||| | || | ||||| |||| || ||| | |||||| || Sbjct 4019 CTTCAGACCCTTCTTCCATGCATAGAAATGCATTGAAGTGAGCTTGGCAAAGTTGGGCTC 4078 Query 203962 GGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCA 204020 ||| || | ||| | | ||| || ||||| ||| ||||| || || || || |||| Sbjct 4079 GGCGATAAAGACGTTGAAACTCTGACTCTGGTCAATG-AAGGCACCACGGTCGGCTGCCA 4137 Query 204021 TATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTC 204069 | | ||| | ||| ||||||||| || |||||| | | ||| Sbjct 4138 TGTCGATCAGCACACGCTGGCGAATCTCCCAGACAGTCTTGTAGAGGTC 4186 >seq3533 Length=1137 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 159911 TTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTG 159970 ||| |||| | ||| |||||||||||||| || |||||||| ||| ||| | ||||||| Sbjct 966 TTATACAGCATGCAAGCAAAGTCGCAGTGTAGACCCTCGTCACGACTGATCAGCTCGTTG 907 Query 159971 GACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGC- 160029 || | | | ||||| ||||| | || | || | ||| | |||| | ||||||| Sbjct 906 GAAAAGGTAAGGCCTGGCATTAAACCCCTTTTCTTCAACCAGTAGATGG-CACAAAAGCT 848 Query 160030 ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCAC 160068 ||||| || ||||| ||||| || || ||||| ||||| Sbjct 847 GCCGCTGAAGAAGATACCCTCAACCGCAGCAAATGCCAC 809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794874639427120