Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1351 138 3e-27 seq4240 134 3e-26 seq3382 129 1e-24 seq3381 127 5e-24 seq8653 102 2e-16 seq13839 100 7e-16 >seq1351 Length=12664 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || ||||||||||| | |||||||||| | | || | |||||| Sbjct 4915 AGCACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCGAGGGTGCGTCCATCC 4856 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||| |||||||||||||||||||| || ||| || || || Sbjct 4855 TCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGAATACCCTCCTTGTCT 4796 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || |||| ||||| ||| Sbjct 4795 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGATCCCTCGACCTCCAGAGTGATGGTC 4736 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| |||||||| ||||| Sbjct 4735 TTTCCAGTTAGAGTCTTCACAAAGATTTG 4707 Score = 127 bits (140), Expect = 5e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAA-AGT 199467 |||||||||| || | ||| || || ||||||||||| | ||| ||||| ||||| ||| Sbjct 5152 CGAAGTCTCAATACCAAGTGAAGGGTGGACTCCTTTTGAATGTTATAGTC-GCCAAGAGT 5094 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||| || |||||||| ||||| |||||||||||||||||||| || ||||| Sbjct 5093 GCGACCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATTCC 5034 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || || |||||||| ||| ||| |||| |||||| | || || || | Sbjct 5033 CTCCTTGTCTTGAATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCCTCAACCTCAAG 4974 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || || || || || Sbjct 4973 TGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTG 4935 Score = 104 bits (114), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || ||||||||||| | |||||||||| | | || | |||||| Sbjct 4687 AGAACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCGAGGGTGCGTCCATCC 4628 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| ||||| ||||| | ||| |||||||| || || || || ||| Sbjct 4627 TCAAGTTGCTTGCCGGCAAAGATCAAACGTTGCTGGTCGGGTGGGATACCCTCCTTGTCC 4568 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || || | ||||| ||| Sbjct 4567 TGGATCTTGNNCTTGACGTTCTCGATGGTGTCGGATCCCTCGACCTCGAGGGTGATGGTC 4508 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || Sbjct 4507 TTGCCAGTGAGGGTCTTGACGAAGATCTG 4479 >seq4240 Length=2116 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||||| |||||||| |||| |||||||||| | || | ||||| Sbjct 1426 AGGACCAAATGGAGAGTTGACTCCTTCTGGATATTGTAGTCAGAGAGGGTACGACCATCC 1367 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||||||||| ||||||||||| |||||||| || |||||| || ||| Sbjct 1366 TCCAACTGCTTTCCGGCAAAGATGAGACGTTGCTGGTCGGGTGGAATTCCCTCCTTGTCC 1307 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | || || || | || || ||| Sbjct 1306 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAGCCCTCGACCTCAAGGGTAATAGTC 1247 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| || ||||| || Sbjct 1246 TTACCAGTGAGTGTTTTTACGAAAATCTG 1218 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || |||||||| || | |||||||||| | ||| | || || Sbjct 1654 AGCACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCAGAGAGAGTGCGACCGTCC 1595 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||||||||| |||||||||||||||||||| || ||||| || ||| Sbjct 1594 TCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTGTCC 1535 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | ||| || || | ||||| ||| Sbjct 1534 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCTTCGACCTCAAGGGTGATGGTC 1475 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||| || || || || || Sbjct 1474 TTTCCAGTCAAAGTCTTGACGAAGATCTG 1446 >seq3382 Length=4522 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||||| |||||||| |||| |||||||||| | || | ||||| Sbjct 4392 AGGACCAAATGGAGAGTTGACTCCTTCTGGATATTGTAGTCAGAGAGGGTACGACCATCC 4333 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||||||||| ||||||||||| |||||||| || |||||| || ||| Sbjct 4332 TCCAACTGCTTTCCGGCAAAGATGAGACGTTGCTGGTCGGGTGGAATTCCCTCCTTGTCC 4273 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| ||| | |||||| | | || || || | ||||| ||| Sbjct 4272 TGGATCTTGGCCTTGACGTTTTCAATGGTGTCGGATCCCTCGACCTCGAGGGTGATGGTC 4213 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || Sbjct 4212 TTGCCAGTGAGGGTCTTGACGAAGATCTG 4184 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || ||||||||||||| ||||||||||| | || | || || Sbjct 4164 AGCACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGACCGTCC 4105 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||||||||| |||||||||||||||||||| || ||||| || || Sbjct 4104 TCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTGTCT 4045 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| ||| || | || || || | ||||| ||| Sbjct 4044 TGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAACCCTCAACCTCAAGGGTGATGGTC 3985 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || |||||||| Sbjct 3984 TTTCCGGTCAGAGTCTTGACGAAAATTTG 3956 >seq3381 Length=12314 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || ||||| ||||| | ||| || || ||||| || |||| |||||||||| | | || Sbjct 1179 CGGAGTCTAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCACCGAGGGTA 1120 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| |||||||| || || ||||||||||||||||| || ||| ||| Sbjct 1119 CGACCATCTTCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCGGGTGGAATACCT 1060 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||| || || | |||||| | || || || | Sbjct 1059 TCCTTGTCTTGAATCTTAGCCTTGACATTCTCAATGGTGTCCGAGCCCTCAACCTCAAGA 1000 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || |||||||| || ||||| || || Sbjct 999 GTGATCGTCTTGCCAGTGAGAGTCTTGACAAAGATCTG 962 Score = 118 bits (130), Expect = 2e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAA-AGT 199467 || ||||| || || | ||||||||| || |||||||||| ||||||||| ||||| ||| Sbjct 1635 CGGAGTCTGAGAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTC-GCCAAGAGT 1577 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||| || |||||||| || || ||||| | |||||||||||| || || || Sbjct 1576 GCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCGGGTGGGATACC 1517 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || || || |||||| ||| ||| || | ||| || | ||| || || | Sbjct 1516 CTCCTTATCTTGGATCTTTGCCTTTACGTTCTCAATGGTATCAGAGCCTTCAACCTCGAG 1457 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||| || ||||| || || || || || Sbjct 1456 AGTGATAGTCTTACCAGTAAGAGTCTTGACGAAGATCTG 1418 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| ||||| ||||| || || ||||| ||||| || |||| |||||||||| | | || Sbjct 952 TCGCAGTCTGAGGACGAGATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCACCGAGGGT 893 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||| || |||||||| || || ||||||||||||||||| || || || || Sbjct 892 GCGACCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCGGGTGGGATACC 833 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || || || ||||| ||| || ||| | ||||| | || || |||| Sbjct 832 CTCCTTATCTTGGATCTTAGCCTTAACATTTTCAATAGTGTCGGAGCCCTCAACCTCCAG 773 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | ||| || ||||| ||||| Sbjct 772 TGTGATGGTCTTGCCAGTCAAAGTCTTAACAAAGATTTG 734 Score = 109 bits (120), Expect = 1e-18 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAA-AGT 199467 || ||||| || || | ||||||||| || |||||||| | ||||||||| ||||| ||| Sbjct 1407 CGGAGTCTGAGAACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTC-GCCAAGAGT 1349 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||| || || ||||| ||||| ||||||||||| ||||| || || || || Sbjct 1348 ACGACCATCCTCGAGTTGCTTGCCGGCAAAGATGAGACGTTGCTGATCGGGTGGGATACC 1289 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || || || ||||| ||| ||| |||| || || | || || || | Sbjct 1288 CTCCTTATCTTGGATCTTGGCCTTGACGTTCTCGATAGTATCCGAACCCTCAACCTCGAG 1229 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | ||| |||||||| ||||| Sbjct 1228 GGTGATAGTCTTTCCGGTCAAAGTCTTCACAAAGATTTG 1190 >seq8653 Length=1535 Score = 102 bits (112), Expect = 2e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 199438 CTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAA 199497 |||||| || | |||||||||| | | || | ||||| || |||||||| ||||| || Sbjct 1 CTCCTTCTGAATGTTGTAGTCACCGAGGGTACGACCATCCTCGAGCTGCTTGCCGGCAAA 60 Query 199498 GATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGA 199557 ||||||||||||||| || || ||||| || || || ||||| ||| ||| Sbjct 61 GATGAGACGCTGCTGATCGGGTGGGATTCCCTCCTTATCTTGGATCTTGGCCTTGACGTT 120 Query 199558 TTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 |||| ||||| | || || || | ||||| ||||| || |||||||| ||||| Sbjct 121 CTCGATAGTGTCAGAGCCCTCAACCTCGAGGGTGATAGTCTTGCCAGTGAGAGTCTTCAC 180 Query 199618 AAAAATTTG 199626 ||| || || Sbjct 181 AAAGATCTG 189 >seq13839 Length=228 Score = 100 bits (110), Expect = 7e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || ||||||||||| | |||||||||| | | || | |||||| Sbjct 141 AGCACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCGAGGGTGCGTCCATCC 82 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||| |||||||||||||||||||| || ||||| || || Sbjct 81 TCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTGTCT 22 Query 199538 TGAATCTT 199545 |||||||| Sbjct 21 TGAATCTT 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178495233056209