Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq4240 116 4e-21 seq1351 109 6e-19 seq8653 98.7 1e-15 seq3382 98.7 1e-15 seq3381 96.9 4e-15 >seq4240 Length=2116 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || ||||||||||| || |||||||| |||| ||||||||||| ||||| || Sbjct 1634 CTCCTTCTGAATATTGTAGTCAGAGAGAGTGCGACCGTCCTCGAGCTGCTTTCCGGCAAA 1575 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||||| || | | |||||||||| |||||| ||||| | Sbjct 1574 GATGAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 1515 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| ||| || || | |||||||| || || |||| || || || Sbjct 1514 CTCGATGGTGTCAGAGCCTTCGACCTCAAGGGTGATGGTCTTTCCAGTCAAAGTCTTGAC 1455 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 1454 GAAGATCTGCAT 1443 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/196 (70%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||| || || || || | || || | |||||| ||||| || Sbjct 1406 CTCCTTCTGGATATTGTAGTCAGAGAGGGTACGACCATCCTCCAACTGCTTTCCGGCAAA 1347 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || |||||||||| || | | |||||||||| |||||| ||||| | Sbjct 1346 GATGAGACGTTGCTGGTCGGGTGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 1287 Query 46522 CGCCACCGTGTCGCTCGA---TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | ||||| ||| || || || | || || || || || || || ||||| Sbjct 1286 CTCGATGGTGTC---CGAGCCCTCGACCTCAAGGGTAATAGTCTTACCAGTGAGTGTTTT 1230 Query 46579 AACAAAGATTTGCATT 46594 || || || |||||| Sbjct 1229 TACGAAAATCTGCATT 1214 >seq1351 Length=12664 Score = 109 bits (120), Expect = 6e-19 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| || |||||||| || ||||| | || || |||||||||||||| || Sbjct 4895 CTCCTTTTGAATGTTGTAGTCACCGAGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCAAA 4836 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||||| || | | ||||||||| |||||| ||||| | Sbjct 4835 GATGAGACGCTGCTGGTCGGGTGGAATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTT 4776 Query 46522 CGCCACCGTGTCGCTCGATTCC---ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | |||||| ||| || || |||| |||||||| || || || || || || Sbjct 4775 CTCGATGGTGTCG---GATCCCTCGACCTCCAGAGTGATGGTCTTTCCAGTTAGAGTCTT 4719 Query 46579 AACAAAGATTTGCAT 46593 |||||||||||||| Sbjct 4718 CACAAAGATTTGCAT 4704 Score = 107 bits (118), Expect = 2e-18 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| || |||||||| || ||||| | || || || ||||||||||| || Sbjct 4667 CTCCTTTTGAATGTTGTAGTCACCGAGGGTGCGTCCATCCTCAAGTTGCTTGCCGGCAAA 4608 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| || |||||||||| || | | |||||||||| |||||| ||||| | Sbjct 4607 GATCAAACGTTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTGNNCTTGACGTT 4548 Query 46522 CGCCACCGTGTCGCTCGAT---TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | |||||| ||| || || || | |||||||| ||||| || || || || Sbjct 4547 CTCGATGGTGTCG---GATCCCTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTT 4491 Query 46579 AACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 4490 GACGAAGATCTGCAT 4476 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| || || |||||| |||||||| | || || |||||||||||||| || Sbjct 5123 CTCCTTTTGAATGTTATAGTCGCCAAGAGTGCGACCATCCTCAAGCTGCTTGCCGGCAAA 5064 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||||| || | | ||||||||| ||||| ||||| | Sbjct 5063 GATGAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTGTCTTGAATCTTGGCCTTGACGTT 5004 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | ||||| || | || || || | |||||||| ||||| || || || || Sbjct 5003 CTCGATGGTGTCAGAGCCC---TCAACCTCAAGTGTGATGGTCTTGCCAGTGAGGGTCTT 4947 Query 46579 AACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 4946 GACGAAGATCTGCAT 4932 >seq8653 Length=1535 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||| ||||| || | ||| |||||| || || ||||||||| Sbjct 194 CCTCCACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGCCG 253 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| |||| || || ||||||||||| || ||||| || || || |||| || Sbjct 254 AGAGTGCGACCGTCTTCAAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCGGGTGGG 313 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | | || ||||| ||||| ||||| || | | ||||| || | || Sbjct 314 ATACCTTCTTTGTCTTGAATCTTTGCCTTGACGTTCTCGATAGTGTCAGAGCCC---TCG 370 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || | |||||||| || || |||| || || ||||||||||||||| Sbjct 371 ACCTCTAGTGTGATGGTCTTTCCAGTCAATGTCTTTACAAAGATTTGCATT 421 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/196 (70%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || || || | || ||||||||||||||||| || Sbjct 1 CTCCTTCTGAATGTTGTAGTCACCGAGGGTACGACCATCCTCGAGCTGCTTGCCGGCAAA 60 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| |||| || | | |||||| || |||||| ||||| | Sbjct 61 GATGAGACGCTGCTGATCGGGTGGGATTCCCTCCTTATCTTGGATCTTGGCCTTGACGTT 120 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | ||||| || | || || || | ||||| || ||||| || || || || Sbjct 121 CTCGATAGTGTCAGAGCCC---TCAACCTCGAGGGTGATAGTCTTGCCAGTGAGAGTCTT 177 Query 46579 AACAAAGATTTGCATT 46594 |||||||| |||||| Sbjct 178 CACAAAGATCTGCATT 193 >seq3382 Length=4522 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| |||||||| || || || || |||| || | |||||| ||||| || Sbjct 4144 CTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGACCGTCCTCCAACTGCTTTCCGGCAAA 4085 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||||| || | | ||||||||| |||||| ||||| | Sbjct 4084 GATGAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTT 4025 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| || || || | |||||||| || || ||||| || || || Sbjct 4024 CTCGATGGTATCGGAACCCTCAACCTCAAGGGTGATGGTCTTTCCGGTCAGAGTCTTGAC 3965 Query 46582 AAAGATTTGCAT 46593 || |||||||| Sbjct 3964 GAAAATTTGCAT 3953 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||| || || || || | || || | |||||| ||||| || Sbjct 4372 CTCCTTCTGGATATTGTAGTCAGAGAGGGTACGACCATCCTCCAACTGCTTTCCGGCAAA 4313 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || |||||||||| || | | |||||||||| |||||| ||||| | Sbjct 4312 GATGAGACGTTGCTGGTCGGGTGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 4253 Query 46522 CGCCACCGTGTCGCTCGAT---TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | |||||| ||| || || || | |||||||| ||||| || || || || Sbjct 4252 TTCAATGGTGTCG---GATCCCTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTT 4196 Query 46579 AACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 4195 GACGAAGATCTGCAT 4181 >seq3381 Length=12314 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| ||||||||| |||||||| | || |||||||||||||| || || Sbjct 1605 TCCTTTTGGATGTTGTAGTCGCCAAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAG 1546 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| ||||||||||||| || | | |||||| || |||||| ||| | || Sbjct 1545 ATCAAACGCTGCTGGTCGGGTGGGATACCCTCCTTATCTTGGATCTTTGCCTTTACGTTC 1486 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || || ||| || || | ||||| || || || || || || || || Sbjct 1485 TCAATGGTATCAGAGCCTTCAACCTCGAGAGTGATAGTCTTACCAGTAAGAGTCTTGACG 1426 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 1425 AAGATCTGCAT 1415 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| |||||||| || ||||| | || |||||||||||||| || || Sbjct 922 CTCTTTCTGGATGTTGTAGTCACCGAGGGTGCGACCATCCTCGAGCTGCTTGCCAGCAAA 863 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| |||| || | | |||||| || |||||| ||| | | Sbjct 862 GATGAGACGCTGCTGATCGGGTGGGATACCCTCCTTATCTTGGATCTTAGCCTTAACATT 803 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || || |||| |||||||| ||||| |||| || ||||| Sbjct 802 TTCAATAGTGTCGGAGCCCTCAACCTCCAGTGTGATGGTCTTGCCAGTCAAAGTCTTAAC 743 Query 46582 AAAGATTTGCATTTT 46596 |||||||||||| || Sbjct 742 AAAGATTTGCATGTT 728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565038962696040