Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_014036.1 Length=174436 Score E Sequences producing significant alignments: (Bits) Value seq3869 168 7e-37 seq2261 122 1e-22 seq2100 93.3 5e-14 >seq3869 Length=8584 Score = 168 bits (186), Expect = 7e-37 Identities = 293/425 (69%), Gaps = 6/425 (1%) Strand=Plus/Minus Query 41085 AAACTGTCTCTACCGACTCCAATTATGGCGGGTGTACGTACTCCTACGCGCCAGTTCTCC 41144 ||| | || || ||||| || || ||| | || || ||||| || || || |||||| | Sbjct 4772 AAAATCTCGCTGCCGACGCCGATCATGTCCGGCGTGCGTACCCCAACCCGTCAGTTCAGC 4713 Query 41145 AGTTGTGTAGTAATTGAATCGGGTGATTCTCTTGGTTCTCTTAACGCTGTAACCTCT--- 41201 || || | || || | || || || | ||| | ||||| ||||| Sbjct 4712 TCCTGCGTGCTGATCGAGTGCGGCGACAGCCTGGATTCCATCAACGCC---ACCTCCAGC 4656 Query 41202 GCGATCGTGAAGTATATTTCACAACGTGCTGGTATTGGGGTTAACGCGGGACATATTCGC 41261 ||||| ||||| || |||| || || || || || || | ||||| || | |||||| Sbjct 4655 GCGATTGTGAAATACGTTTCCCAGCGCGCCGGCATCGGCATCAACGCCGGGCGCATTCGC 4596 Query 41262 GCAATGGGTTCTAAAATCCGTGGTGGTGAAGCTGTTCATACTGGTGTGATTCCTTTCTGG 41321 || |||| ||||| || || ||||| | || || || ||||| |||| Sbjct 4595 GCGCTGGGCAGCCCGATCCGCGGCGGCGAAGCCTTCCACACCGGCTGCATTCCGTTCTAC 4536 Query 41322 AAACATATCCAAACCGCTGTTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTGCA 41381 || ||| |||| ||||| || |||||||| || ||||| ||||| || || || || ||| Sbjct 4535 AAGCATTTCCAGACCGCGGTGAAATCCTGCTCGCAGGGCGGCGTGCGCGGCGGCGCGGCA 4476 Query 41382 ACACTGTATTATCCTTTCTGGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACAAC 41441 || || | || || | |||||||||||||| |||| ||| |||||| |||| |||||| Sbjct 4475 ACCCTCTTCTACCCAATGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAAAACAAC 4416 Query 41442 AAAGGCGTAGAAGAAAACCGCGTTCGTCATCTTGATTACGGTGTACAGCTTAACCAGTTG 41501 || || | |||||||||||||| | || ||||| |||||| | ||| || || Sbjct 4415 CGTGGTACCGACGCCAACCGCGTTCGTCACATGGACTACGGGGTACAGATCAACAAGCTG 4356 Query 41502 ATGTA 41506 ||||| Sbjct 4355 ATGTA 4351 Score = 86.0 bits (94), Expect = 7e-12 Identities = 106/144 (74%), Gaps = 6/144 (4%) Strand=Plus/Minus Query 43404 GTGAACGCTCTGGAAGCGATCCGTTTCTATGTGTCGTTTAGTTTCACCTTTAACTTTGCT 43463 || || || |||||||||||||| ||||| || || | | |||| |||||| Sbjct 2394 GTTAATGCCCTGGAAGCGATCCGCTTCTACGTCAGCTTCGCCTGCTCCTTCGCCTTTGCC 2335 Query 43464 GAACAGGGCAA---GATGGAAGGCAACGCTAAAATTATGCGCCTGATTGCGCGTGATGAA 43520 |||| |||| ||||||||||||||| |||||||| |||||||| || || |||||| Sbjct 2334 GAAC---GCAAACTGATGGAAGGCAACGCCAAAATTATCCGCCTGATCGCCCGCGATGAA 2278 Query 43521 GCATTGCATCAGAAAGGTACTCAG 43544 || |||| | || || || ||| Sbjct 2277 GCGCTGCACCTGACCGGCACCCAG 2254 >seq2261 Length=3986 Score = 122 bits (134), Expect = 1e-22 Identities = 129/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 51221 GAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCGGTT 51280 |||||||| ||||| | ||||| ||||| || |||||||| || || || ||| | Sbjct 505 GAAGGTGGTCAGCACCTGAACGTGAACGTCATGAACCGCGAAATGCTGCTCGACGCGATG 564 Query 51281 GAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCGTTTT 51340 ||| | || |||||||| || ||| | || |||||||| ||||| || || || |||||| Sbjct 565 GAAAACCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCTGGCTACGCCGTACGTTTT 624 Query 51341 AACTCACTGACCCCTGAACAGCAACGCGACGTTATCGCCCGAACCTTTAC 51390 ||||| |||||| |||||||| | || ||||| |||| ||||| || Sbjct 625 AACTCCCTGACCAAAGAACAGCAGCAGGATGTTATTACCCGTACCTTCAC 674 >seq2100 Length=19628 Score = 93.3 bits (102), Expect = 5e-14 Identities = 165/236 (70%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 39960 GACCAGAT-AGCAAAAGTCATTGAACAACTGAAATCAAC--CCCAGACGATCGCGGGATC 40016 |||||||| |||| || || | || |||||| ||| ||| ||| ||| ||||| Sbjct 19396 GACCAGATCAGCACG-GTGATGAACCAGCTGAAA--AACGACCCGGACTCCCGCCGGATC 19452 Query 40017 ATCGTTTCTGCCTGGAACCCTGTTGATCTTGATGATATGGCATTGCGTCCGTGTCACTGT 40076 ||||| || || |||||| | || || ||| | ||||| || ||||| ||| Sbjct 19453 ATCGTCTCGGCATGGAACGTCGGCGAGCTGGATAAAATGGCGCTGGCGCCGTGCCACGCC 19512 Query 40077 TTCTTTCAGTTCGTTGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCAGTT 40136 ||||| |||||| || | |||| || || || ||| |||||||||||| Sbjct 19513 TTCTTCCAGTTCTACGTCGCCGACGGCAAGCTCTCCTGCCAGCTGTATCAGCGTTCCTGC 19572 Query 40137 GATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTATGCTCTCCTGACGCATAT 40192 ||||| ||| | || ||||||||||||||||| |||||| || ||| |||||| Sbjct 19573 GATGTGTTCCTCGGCCTGCCGTTCAATATCGCCAGCTATGCGCTGCTGGTGCATAT 19628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557870292964320