Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_014458.1 Length=59598 Score E Sequences producing significant alignments: (Bits) Value seq19823 105 3e-18 seq6038 84.2 8e-12 >seq19823 Length=496 Score = 105 bits (116), Expect = 3e-18 Identities = 226/335 (67%), Gaps = 2/335 (1%) Strand=Plus/Minus Query 54043 CATCAACGCGCACCACAACTACACGCAGAAGGAGCGGCACGGCGACCGTGACGTGTGGTT 54102 ||||||| |||||||||| ||| || |||| |||| || | |||||| | Sbjct 362 CATCAACTGCCACCACAACTTCACCGAGTCGGAGAAGCACTACGGGAAGCAGGTGTGGGT 303 Query 54103 GACCCGTAAGGGTGCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTCGAT 54162 | | || ||||| || ||| | ||| ||| ||| | |||||| || || || ||||| Sbjct 302 GTCACGGAAGGGAGCCATCCAGGCGGACGCCGGTCGACCGGGCCTCATCCCCGGGTCGAT 243 Query 54163 GGGCACCTGTTCGTATGTCGTGACCGGCAAGGGCAATCCCGAGGCGTTGTGCTCGGCGCC 54222 ||| ||| || || || ||| || ||| | || || || || ||| | || Sbjct 242 GGGGACCGCCTCTTACGTGGTGGAAGGGCTCGGCGACCCGCAGTCGCTGAACTCCTCCCC 183 Query 54223 GCACGGTGCGGGCCGCCGGTTCTCGCGCACGAAGGCACGCAAGCTGTTCACGGTCGACGA 54282 ||||||||| || || || ||| ||| || ||| || | |||||| |||| | Sbjct 182 GCACGGTGCCGGACGGGAGTACTCCCGCTCGGCGGCGCGGCGGACCTTCACGCACGACCA 123 Query 54283 CCT-CGAAGCGCGTATGACGGGCATCGAGTACCGCAAGGGCGAGGCGTGGGTCGATGAGA 54341 || ||| ||| |||||||||||||||| ||| | ||| || | |||| |||| Sbjct 122 GCTGCGAGAGGCG-ATGACGGGCATCGAGTTCCGTGACACCGATGCCTTCATCGACGAGA 64 Query 54342 TTCCCGACGCTTACAAGCCGATCGACGTTGTGATG 54376 | || | || ||||||||||||||| |||||| Sbjct 63 TCCCGCAGGCGTACAAGCCGATCGACCAGGTGATG 29 >seq6038 Length=789 Score = 84.2 bits (92), Expect = 8e-12 Identities = 59/66 (89%), Gaps = 1/66 (2%) Strand=Plus/Plus Query 1000 GTAGCTCAATTGGCAGAGCAGCGGTCTCCAAAGCCGCCGGTTGCACGTTCGAGTCGTGCC 1059 |||||||||||||||||||||||||||||||| |||| ||||||| |||||| || || | Sbjct 416 GTAGCTCAATTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGATTCCTGTC 475 Query 1060 GCGCCC 1065 ||||| Sbjct 476 -CGCCC 480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190528114395440