Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_014636.1 Length=225268 Score E Sequences producing significant alignments: (Bits) Value seq4092 215 7e-51 seq3869 165 1e-35 seq1086 86.0 9e-12 >seq4092 Length=20610 Score = 215 bits (238), Expect = 7e-51 Identities = 735/1130 (65%), Gaps = 19/1130 (2%) Strand=Plus/Plus Query 123848 TTCATGCAATCCAATATAGCCAATGCTAACAGATGCGCGACCATTTTCAAATGCTTTCAT 123907 |||||| | || |||||||| | || || ||||| || |||| || | | || Sbjct 16669 TTCATGGATACCGATATAGCCCAGAGAAATGGACGCGCGGCCGTTTTTGAA-GATCTCGG 16727 Query 123908 -GATGTCATCATTTGGTTTCAGACGAACACCACAAGCACCTTCAACATAAAGAATCGGAG 123966 || ||| || | | |||||| || || || || || ||||| | ||| || ||||| | Sbjct 16728 AGACGTCGTCGTCGGCTTTCAGCCGCACGCCGCAGGCGCCTTCCATATACAGGATCGGCG 16787 Query 123967 CAACGCTTGCCTTGACACCACGCAGACGATCAACGCGAGTCAACAAAGCTTTCTTAACGA 124026 | |||| ||||| || || ||| || | | || |||| || ||||| | | Sbjct 16788 CCACGCGAGCCTTCACTCCTTCCAGGCGGGCGATACGGGTCATCAGCGCTTTGCGCGCCA 16847 Query 124027 TTTCCATACGCTCTTCCAGAATTTCAAAGAAGCGCATTTGATTGCCGTTTGCGTCGAGTG 124086 | || ||||| ||||| | | ||||| || || ||| || || || || | Sbjct 16848 GCTGCAGGCGCTCGTCCAGCAGCGCCCAGAAGGCGGCTTCATCGCCTTTCGCTTCCAGGG 16907 Query 124087 CGATACGCGGCAAGTTCAGAGTAACAACACCGAGATTGTTTCTGCCTTCATGAACTTCAT 124146 |||| ||||||| ||| ||| | | || ||||| || || | || ||||| || | | Sbjct 16908 CGATGCGCGGCAGGTTGAGACTGATCACGCCGAGGTTATTGCGTCCATCATGCACCTGCT 16967 Query 124147 TACCGGTTTCGTCTTCCCAGCGATGCAAGAAACTACGGCATCCCATAGGGAACTTAAAGC 124206 ||| | |||| |||||| | ||| || ||||| ||||| || ||||| Sbjct 16968 CGCCGTTCTCGTTTTCCCATACCCCGAGGAAGCTGCGGCAGCCCATCGGCGTTTTAAACG 17027 Query 124207 TACCAGTCACTTCTACCACTTTATCATAACTCAAGATGTCTGGATACATACGCTTGGCAG 124266 || || |||| ||||| | ||| || | | ||| || || ||||| |||||| | Sbjct 17028 ACCCGGTGACTTTCACCACCTGATCGTAGTTGAGGATATCCGGGTACATGCGCTTGCTGG 17087 Query 124267 CGCACTCCAGTGCCATCTGTTTGATACGATACAGAGGATCAGTTGGTTTCAAGTTGTGTC 124326 |||||||||| |||| ||||||||| || || || || ||| | | Sbjct 17088 CGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTCGGGTCGCCGAACTTATGGTTCAGGC 17147 Query 124327 CGTCTTTCAGCGCGAAAACAAGTTTCGGGAAAACGGGAGTAATACCTTCTTTGCCAAGAC 124386 |||| | |||||| || ||||||||||| || | || | | | ||| || || | Sbjct 17148 CGTCGCGGATCGCGAACACCAGTTTCGGGAACACCGCGGTTTTGCGATTTTTACCGAGGC 17207 Query 124387 CTTTCATCCGAACTTTCAGAATTGCTTCCTGAATGAGTTCGGATTCCCAGCTAGTGCCTA 124446 | || || |||||| | | ||| || || ||||||||||| ||||| | Sbjct 17208 CGGCAATGCGGTTGCGCAGAATCGACTGCTGGATCAGCCGCGATTCCCAGCTGGTGCCAA 17267 Query 124447 GTCCAAACCCGAAAGTGCAGAATGGAGTTTGACCATTTGCCGAGTGCAGAGTGTTTACCT 124506 | || |||||||| ||| ||| || || || || || || | ||||| ||||| |||| Sbjct 17268 GGCCGAACCCGAAGGTGACGAACGGCGTCTGGCCGTTGGCGGTATGCAGTGTGTTGACCT 17327 Query 124507 CATACTCTAGGCTTTGCATTGCATCATA-CACGGCTTTGCGAGTCTTTTCAATAGCGTAT 124565 ||||||| || || | || || || ||| ||| || || | | | || Sbjct 17328 CATACTCCAGCGACTGGAAGGCGTCGTAGCACTCTTTTTCG-GTACGGGC--GCGGGCAT 17384 Query 124566 TGCCTTTG--ATCTGGAATTTTCCA--ATAACGCGCTTCATCCAAATGC-TTTTCATGTG 124620 ||||| | ||| || || | ||| | ||| || | |||| |||| | | Sbjct 17385 AGCCTTCGGCATCCGGGATCTGCCACTCTTCGGCGATT--TTGCGATGCTTTTTGAAGCT 17442 Query 124621 TCATCTTAACATAAGGTGCCAATGCTTCGTCAATGCGATTAATTGTGTTGCCACCATAAA 124680 | | | || | || |||| |||| || ||||| || || ||| |||| || |||| Sbjct 17443 TTCGC-TGACGAACGGCGCCAGCACTTCATCGATGCGGTTGATGGTGGTGCCGCCGTAAA 17501 Query 124681 TGTGACTTGCAACCTGTGCAATGATTTGAGCAGTAACAGCCGCAGCGGTAGCGATGCTCT 124740 | || || || ||||| || ||||| || || || || || | ||||||| ||| || Sbjct 17502 TATGGCTGGCGACCTGGGCGATGATCTGCGCCGTCACCGCGGTGGCGGTAGAGATAGACT 17561 Query 124741 TAGGAGTTTCGATCTGTGCATTACCCATGCGGAA-CCCACGCTCTAACATGCCGTTGAGA 124799 | || | ||||||| || || ||||| || ||| | || | |||||| || ||| Sbjct 17562 TCGGCGGCTCGATCTCCGCGTTGCCCATCTTAAAGCCCTGGGTC-AGCATGCCTTTCAGA 17620 Query 124800 TCAATCAACATGCAGTTAAACATTGGGAAGAACGGAGAGTAATCAAGATCATGGAAGTGA 124859 || |||| ||||||||| ||||| |||||||| || |||||||| || ||||| |||| Sbjct 17621 TCGATCAGCATGCAGTTGAACATCGGGAAGAAGGGCGAGTAATCGAGGTCATGATAGTGG 17680 Query 124860 ATAAAACCAGCTTCGTGTGCTTGCAGAACTTC---GGTCGGCAGATAGTGCTTTGCAAAG 124916 || | || ||||| || || || || || | |||| | ||| || || Sbjct 17681 ATCATGCCGCGCTCGTGGGCCATCACCACATCGTGGGGCAGCAGGTGCTGCCGGGCGTAG 17740 Query 124917 TGCTTGCTTACTATGCCCGCGACTAAATCGCGTTGTGTCGGAATAACTTT 124966 |||||| || || || || | | ||||| || ||||| || ||||| Sbjct 17741 TGCTTGGCGACGATACCGGCCAGCAGGTCGCGCTGGGTCGGGATGACTTT 17790 Score = 98.7 bits (108), Expect = 1e-15 Identities = 174/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 123378 AACTCACCGTTAAATCCACATTCAAAACAAACATCAACTGGAGTGTTTGTTCCATAGTAC 123437 ||||| ||| |||| || || || | || |||| | || || || || || |||||| Sbjct 16199 AACTCGCCGGTAAAACCGCACTCGTAGCACTCATCGATCGGCGTATTGGTCCCGTAGTAC 16258 Query 123438 GGAGTGTTCCGATAAGCATAATCCCAAACTGCTTCGAGTGCTTCCAGATTGTGTTTCATA 123497 || || | |||| |||||||| || |||| || || | || || || | ||| Sbjct 16259 GGCACGTGCTGATAGCTGTAATCCCACACGTCTTCCAGCGCCTTGAGGTTATGCTGGATA 16318 Query 123498 TTCGGATATTCACCGTATGAAATGAAACCACCGGTACTAAGCGGAATGAATTGCTTTTCA 123557 ||||| || || ||||| ||||||| || ||| | ||||| | | || ||| Sbjct 16319 TTCGGGTACTCGCCGTAGCAAATGAACCCCCCGTTGGCCAGCGGCGGGTACGGCGCTTCG 16378 Query 123558 AAATCGATCTTGTCATACGGATTTGTGTTCATATCCACAGACAGATGGAAGCTGTTTGTG 123617 ||||||||||| || ||||| || ||| | ||||| || ||||||||||| ||| Sbjct 16379 AAATCGATCTTATCGTACGGGTTGACCTTCTTCTCCACGTCGAGGTGGAAGCTGTTGGTG 16438 Query 123618 TAATAGTCTTTATC 123631 || || |||| || Sbjct 16439 TAGTAACCTTTGTC 16452 >seq3869 Length=8584 Score = 165 bits (182), Expect = 1e-35 Identities = 316/458 (69%), Gaps = 6/458 (1%) Strand=Plus/Plus Query 129013 GGACTGAACAAGGTAATATAGTCGTCGTTTTTCA-ACCGTTCTAACATCAGCTTATTGAT 129071 || ||||||| |||||||| | || | || || || | | || ||||||||| ||||| Sbjct 4309 GGGCTGAACAGGGTAATATCGCCGCCCTTCAGCAGACGGGTGTA-CATCAGCTTGTTGAT 4367 Query 129072 TTGGATACCGTAGTCAAGATGTCGGATTCGGTTTTCTTCAACGCCCTTGTTATTCTTGAG 129131 || | |||||||| | || || | ||||| | || || ||| || || || Sbjct 4368 CTGTACCCCGTAGTCCATGTGACGAACGCGGTTGGCGTCGGTACCACGGTTGTTTTTCAG 4427 Query 129132 CACAAGGATTTTTTCAACTTCGAGGTGCCACATTGGGTAATATAGAGTTGCGGCACCGCC 129191 ||| || | |||| ||||| || |||||||||||||| | || ||||| || ||||| Sbjct 4428 CACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAAGAGGGTTGCCGCGCCGCC 4487 Query 129192 GCGAACACCACCCTGTGAACAGCTCTTTACCGCAGTCTGGAAGTATTTCCAAAATGGGAT 129251 ||| || || ||||| || ||| || ||||| |||||||| | || | || || || Sbjct 4488 GCGCACGCCGCCCTGCGAGCAGGATTTCACCGCGGTCTGGAAATGCTTGTAGAACGGAAT 4547 Query 129252 AATACCGGTATGTCGCACTTCACCGCTACGAATGCGAGAT-CCCTCGGCACGAAT-CGCA 129309 ||||| || |||| |||| || || || | | ||| || ||||| ||| Sbjct 4548 GCAGCCGGTGTGGAAGGCTTCGCCGCCGCGGAT-CGGGCTGCCCAGCGCGCGAATGCGC- 4605 Query 129310 CCGCCGTTGATGCCGATACCAGCGCGTTTGCTGATATAGTCAACGATAGAACTAGCGGTA 129369 ||| ||||||||||||| || ||||| | | | || | || || | || | ||| Sbjct 4606 CCGGCGTTGATGCCGATGCCGGCGCGCTGGGAAACGTATTTCACAATCGCGCTGGAGGTG 4665 Query 129370 GCGTTGATGCTATCCAGTTCGTCTCCACATTCGATCTTGACACAAGAGCTAAACTGCCGA 129429 ||||||||| |||||| ||| || || |||||| || || ||||| ||||| || Sbjct 4666 GCGTTGATGGAATCCAGGCTGTCGCCGCACTCGATCAGCACGCAGGAGCTGAACTGACGG 4725 Query 129430 GTCGGGGTGCGAACACCTGCGAGAATCGGAGTTGGCAG 129467 || ||||| || || || | | ||||| || ||||| Sbjct 4726 GTTGGGGTACGCACGCCGGACATGATCGGCGTCGGCAG 4763 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 127052 ATACTGGGTGCCTTTGAGGTGCAATTGTTCATCACGCGCAATCAGTTTCATGATCTTAGC 127111 || ||||||||| | ||||||| |||||| || || ||||| || || || || Sbjct 2251 ATGCTGGGTGCCGGTCAGGTGCAGCGCTTCATCGCGGGCGATCAGGCGGATAATTTTGGC 2310 Query 127112 GTTGCCTTCCATCAAACCGCGTTCGGCAAACGAGAAGGTGCAGGCGAAGCTTACATAAAA 127171 |||||||||||||| |||||||||||| | ||||| |||||||||||| || || || Sbjct 2311 GTTGCCTTCCATCAGTTTGCGTTCGGCAAAGGCGAAGGAGCAGGCGAAGCTGACGTAGAA 2370 Query 127172 ACGAATCGCTTCCA 127185 || |||||||||| Sbjct 2371 GCGGATCGCTTCCA 2384 >seq1086 Length=52069 Score = 86.0 bits (94), Expect = 9e-12 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 189963 TGGTGCGGATGGTCGGACTCGAACCGACACGCCTATGGCGCTAGAACCTAAATCTAGTGC 190022 |||||||||| | ||||||||||| |||| | | ||| ||||||||||||| |||| Sbjct 33151 TGGTGCGGATAGAGGGACTCGAACCCCCACGG-TCTCCCGCCAGAACCTAAATCTGGTGC 33093 Query 190023 GTCTGCCAATTTCGCCACATCCGC 190046 |||| |||||||||||| |||||| Sbjct 33092 GTCTACCAATTTCGCCATATCCGC 33069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720475299569760