Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq19 174 6e-38 seq7273 100 1e-15 seq3381 100 1e-15 seq54 96.9 1e-14 seq8653 95.1 5e-14 >seq19 Length=770976 Score = 174 bits (192), Expect = 6e-38 Identities = 257/361 (71%), Gaps = 6/361 (2%) Strand=Plus/Plus Query 451242 CTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATA 451301 |||| |||| ||||| | ||| |||| ||||||||| |||| || ||| | | | Sbjct 316275 CTCCACAAGAGATTTCTGCAATGATTCTGCAGAAAATGAAAAAAACTGCCGAAGACTTTT 316334 Query 451302 TTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAAC 451361 | ||| ||| ||||| || || || || ||||| |||||||||||||| ||||||| Sbjct 316335 TAGGTCAGGAAGTAACTGAAGCTGTGATCACAGTTCCTGCTTATTTCAATGACGCACAAC 316394 Query 451362 GGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATG 451421 | || || || ||||| || || | ||||| ||||||| ||| | || ||||| | Sbjct 316395 GTCAGGCTACAAAAGAGGCTGGTGAGATTGCAGGTTTAACTGTAAAAAGGATCATTAACG 316454 Query 451422 AACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaa 451481 ||||||| ||||| ||| |||| ||||| | ||| ||| | ||| |||| | | Sbjct 316455 AACCTACTGCAGCGGCTTTAGCCTATGG-TTTGGA----TAAAGCACACA-AAGACATGA 316508 Query 451482 aTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAG 451541 | ||| | || ||||| | |||||| || || ||||| ||||||| | | | | | Sbjct 316509 AAATTGTTGTGTTTGACTGTGGTGGTGGTACACATGACGTTTCTGTATTGGAACTGGGTG 316568 Query 451542 ATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTG 451601 |||| || ||||||||||| |||| | |||||||| || || || ||||| || ||| Sbjct 316569 ATGGTGTTTTTGAAGTAAAATCAACTGACGGTGATACCCACCTGGGTGGTGATGACTTTG 316628 Query 451602 A 451602 | Sbjct 316629 A 316629 >seq7273 Length=4713 Score = 100 bits (110), Expect = 1e-15 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 451205 ATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATG 451264 || ||||| | || | || ||||| || || ||||| || ||||| | || ||||| Sbjct 278 ATACAAGTCGAGTACAGGGGCGAAACAAAGACGTTTGCACCCGAAGAGCTGTCGGCTATG 337 Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 |||| | |||||| | | ||||| |||| || || || | || | || Sbjct 338 ATTCTGATGCGGATGAAACAGATCGCAGAGACATATTCGGGATCAACACTCACCAAAGCT 397 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || || || || || || | || || ||||||||||| || || |||||||| ||||| Sbjct 398 GTCATCACAGTGCCGGCGCACTTTAACGATGCACAACGACAGGCTACTAAAGACGCAGGG 457 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 |||||||||| | ||||| | ||||| || || ||||| || |||||||| Sbjct 458 ACTATTGCTGGTCTGAATGTACAGCGAATCATGAACGAACCAACTGCAGCTGC 510 >seq3381 Length=12314 Score = 100 bits (110), Expect = 1e-15 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || |||||||| ||||| ||||| || |||||| ||| Sbjct 1415 ATGCAGATCTTCGTCAAGACTCTTACTGGTAAGACTATCACTCTCGAGGTTGAAGGCTCT 1474 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | || ||| || ||||||||||| || || || || || || Sbjct 1475 GATACCATTGAGAACGTAAAGGCAAAGATCCAAGATAAGGAGGGTATCCCACCCGACCAG 1534 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACT-TTGGCGGATTATAA 391228 || ||||| || || | || || || || || ||||| | ||| ||||| || || || Sbjct 1535 CAGCGTTTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTTGGC-GACTACAA 1593 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 || | ||||| | || || ||||| || | ||||| Sbjct 1594 CATCCAAAAGGAATCTACTCTCCACTTGGTTCTCAGACT 1632 >seq54 Length=222966 Score = 96.9 bits (106), Expect = 1e-14 Identities = 187/268 (70%), Gaps = 10/268 (4%) Strand=Plus/Minus Query 63793 AACTTGTTAAATTGATCCTCTAATTTAAATGCTTCTTCAGTAAATTGTTTAGTATC--CT 63850 ||||| ||| || |||| ||| ||| |||| || |||||| ||||| | || Sbjct 120013 AACTTATTATATAGATCAACTACTTTTTTGGCTTTATCTTTAAATT---TAGTAGCGTCT 119957 Query 63851 TAT-CACTCCACCAATTATTTAAATTACCATCCGCATCAAATCTTTTTCCTTGATCATCA 63909 | || ||||||| | ||||||||||| || ||| || | | || ||||||||| Sbjct 119956 GCTGCAGTCCACCAGTCTTTTAAATTACCCTCTTTGTCATATTGTCTGCCCTGATCATCA 119897 Query 63910 AACCCATGAGTGATTTCATGAGCTATAACTACTCCAATTCCTCCATAATTTTGTGCAATC 63969 || ||||| || ||||| || | || || | ||||| | |||||||| || || Sbjct 119896 AATCCATGGGTCATTTCGTGTCCAATTACAGCACCAATAGCACCATAATTGATCGC-GTC 119838 Query 63970 GTATAATCTAAACT-aaaaaaaGGTGGTTGTAAAATAGCAGCTGGAAATACAATTTCATT 64028 | | || ||| | ||| ||||| ||| | ||| | || || ||||| |||||| | Sbjct 119837 ATCTGCTCCAAAATCAAAGAAAGGGAATTGAAGAATTCCGGCAGGGAATACGATTTCA-T 119779 Query 64029 TAATA-AAGGATGATAATAAGCATTTAC 64055 ||||| | |||| ||||||||||||||| Sbjct 119778 TAATAGATGGATTATAATAAGCATTTAC 119751 >seq8653 Length=1535 Score = 95.1 bits (104), Expect = 5e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 391042 ATATTATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTG 391101 |||| |||||| | || || || || ||| ||||||| || || || || || || || | Sbjct 428 ATATAATAATGCAAATCTTTGTAAAGACATTGACTGGAAAGACCATCACACTAGAGGTCG 369 Query 391102 AATCATCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTC 391161 | ||||| | || || | || ||| |||||||| || ||||| || || | Sbjct 368 AGGGCTCTGACACTATCGAGAACGTCAAGGCAAAGATTCAAGACAAAGAAGGTATCCCAC 309 Query 391162 CTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGG 391221 | |||||||||||||| || || | || || ||||||||||| || | ||| | | | Sbjct 308 CCGATCAACAACGTTTGATCTTTGCCGGCAAGCAACTTGAAGACGGTCGCACTCTCGGCG 249 Query 391222 ATTATAATATTGATAAGGATGCAACACTTCACTTAGT 391258 | || || ||| | ||||| | || || ||||| || Sbjct 248 ACTACAACATTCAGAAGGAGTCTACCCTCCACTTGGT 212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975003864770516