Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq13335 176 5e-39 seq19281 127 2e-24 seq3843 100 3e-16 seq6392 91.5 2e-13 seq2691 91.5 2e-13 seq271 91.5 2e-13 seq3533 89.7 6e-13 >seq13335 Length=4250 Score = 176 bits (194), Expect = 5e-39 Identities = 625/974 (64%), Gaps = 36/974 (4%) Strand=Plus/Plus Query 106445 TTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCT 106504 |||||| |||| || || || || ||||| | ||||| |||||| ||| || Sbjct 1991 TTGACAAACTTGGGCAGTGCAATCGATGCAAGGTTGCAGACAGCCACCTCCTCTGGCGAC 2050 Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 ||||||| | || || || |||| |||| | || || || | |||| |||| Sbjct 2051 GTGTACTGGATGATCTCGGTGCACAGGTTGCTCGACGAGATAGTGCCGAGGTTCTGTTGG 2110 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 || ||| ||||||| |||||||| || ||||| || || || ||||| |||| Sbjct 2111 TTGGACTTGCCATTGCACGAGTCCTTGTATAGGATGTACGGGGTGCCTGTCTCGATCTGG 2170 Query 106625 GACTTGAGAATTGCCTTCCACACATCGGCGGC-----TGGTACAATGGCGTTGGC--CCG 106677 |||| ||| || | ||||| || || |||| | ||||| | ||| Sbjct 2171 GACTCGAGGATCGAGAACCACAGGTCTTGTGCCTTGATGGTGC---GGCGTGCGAGGCCG 2227 Query 106678 TCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAG 106737 || || ||||| |||||| | | |||| ||| ||| | ||||| || Sbjct 2228 GGTGTC-GCTTCGTAGCGCAGGTAGAGTTCGTTGAACTTCTCGCCCCAGGTGTCGGCAAG 2286 Query 106738 ACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCAT 106797 ||||| |||| || || ||||| || ||||| | | ||||||| |||| ||| Sbjct 2287 GCCTGGCGCCTCGTTCGGGCAGAAGAGTGACCAGTCGGCGTTGGCCTCAACGCGCTGCAT 2346 Query 106798 GAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACC 106857 || | ||| | ||||| || | | ||||| || | | || ||| || | || Sbjct 2347 AAACAAGTCAGAGATCCAGAGTGCGTAGAAGAGGTCGCGAGCACGCATCTCCTCCTTGCC 2406 Query 106858 TTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGAC 106917 ||||| || | ||||||||||||||||| || |||||||||||||| || |||| Sbjct 2407 GTGGTTCTTGCGCAGGTCAAGGAACTCCATGATGTCGGCGTGCCATGGCTCCAGGTAGAT 2466 Query 106918 TGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAA 106974 || | | ||||| || | ||| | || | ||||| || || ||| ||||||| Sbjct 2467 GGCAAAGGCGCCCTTGCGCTTGCCGCCACCCTGGTCAACATAACGTGCAGTGTCGTTAAA 2526 Query 106975 TACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAA--TACGAGAT 107032 || || |||||||||| | || | || ||| || || || || | |||||| Sbjct 2527 GACACGCAGCATTGGAACCAGTCCGTTCGAGGTACCGTTGGTGCCGCGGATGTACGAG-- 2584 Query 107033 TTATTGGCTCTCACATCATGGA---TGTGCATC------CCAATACCCCCAGCCCACTTT 107083 | | | || ||| |||||| | || || || || ||| |||| Sbjct 2585 ---------CGCGCGGCACGGATCTTGTGCACCGACAAACCGATGCCTCCGGCCGACTTG 2635 Query 107084 GAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTG 107143 ||| || |||| | | ||||| | ||||| || | ||| ||||| ||||| | Sbjct 2636 CTGATCAATGCGCACTGCTTCAGAGTATCGTAGATTCCATCGATAGAGTCGTCCTTCATC 2695 Query 107144 GCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGT 107203 | |||||||| |||||||| || |||| || || | ||||| || || || Sbjct 2696 TGCACCAGGAAGCATGACGACATCTGGGGCATTGGCGTGCCCGAGTTGAACAGCGTGGGC 2755 Query 107204 GTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATG 107263 || || || |||||| | | |||| | ||||| || | | | | | |||||| Sbjct 2756 GTGGCATGCGTGAACAGGCGACGCGACAGCAGCTCGTAGGTGTGGATGGCGGCGTCAATG 2815 Query 107264 TCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGG 107323 || |||||||||||||| | ||||||||| | ||||| ||||| || | | Sbjct 2816 TCGCGGCCGTGGATGCCGATCGACACACGCATCAGCATGTGCTGGGGACGCTCGACAATC 2875 Query 107324 ATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAA 107383 | |||| || || || ||||||||||| || || |||| ||||| | || || Sbjct 2876 TCGTTGTCGATGCGCTGCAGGTAGCTCTTCTCGAGTGTCTTGAAGCCAAAAAAGTCATAA 2935 Query 107384 TCATAGTCCCGCTT 107397 ||| |||| ||||| Sbjct 2936 TCAAAGTCGCGCTT 2949 >seq19281 Length=570 Score = 127 bits (140), Expect = 2e-24 Identities = 177/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 107063 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 107122 || || || ||||| |||| ||||| | || |||| | | ||||| | ||||| || Sbjct 111 CCGATGCCACCAGCAGACTTGGAGATGAGAGCGCACTGCTTGAGAGTGTCGTAGATGCCC 170 Query 107123 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 107182 | ||| ||||||||||| | || |||||||| ||||| || || | || || Sbjct 171 TCGATCGAGTCCTCCTTCATCTGGACGAGGAAGCACGACGACATTTGAGGGATGGGAGTG 230 Query 107183 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTAT 107242 ||||| ||||| |||||||| || |||||| |||||| || || || | | || ||| Sbjct 231 CCAGCGTTGAACAGGGTTGGCGTGGCGTGAGTGAACAGACGCTGCGAGAGCAGGTTGTAG 290 Query 107243 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATG 107302 || | | | | | ||||||||| ||||||||||| || | |||||||| | |||| Sbjct 291 GTGTGGATGGCGGCATCAATGTCGGTGCCGTGGATGCCAATCGAGACACGCATCAGCATG 350 Query 107303 TATTGGGG 107310 | |||||| Sbjct 351 TGTTGGGG 358 >seq3843 Length=4024 Score = 100 bits (110), Expect = 3e-16 Identities = 188/271 (69%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 7029 AATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCA 7088 || || || ||| |||| || ||| || ||| || |||||||||||||| |||||| Sbjct 3376 AACTATCGTGAGGCTTATGGCATGTACGCTTGCAATGGTATCCTCTTCAACCACGAATCA 3435 Query 7089 CCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTACCGAGGGTATCAAACAAATCATG 7148 ||| | |||| || |||||||| | ||||| ||| || | | | || | Sbjct 3436 CCGCGCAGAGGAGCTACTTTTGTCACCAGAAAGATCACCAAGTTTGTTGCTGCCACCAAG 3495 Query 7149 AAGGGTGAAAAGGAGTTCATTGAAT-TGGGTAACATAAACGCGGAGAGAGATTGGGGTCA 7207 || | |||| | | || | | |||||| | || || || | ||||||||||| Sbjct 3496 CTCGGCAAGAAGG-GCACCCTGCTTCTCGGTAACTTGAATGCCAAGCGTGATTGGGGTCA 3554 Query 7208 CGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAGGAAGCC-GACGAAT 7266 ||| |||||||| || || || |||||| | ||||| || ||||| |||||| ||||| | Sbjct 3555 CGCCAAGGACTACGTCGAGGCAATGTGGTTGATGCTCCAGCAAGA-GAAGCCAGACGACT 3613 Query 7267 ATGTAGTAGCAACGGGTGAGACCCATTCAGT 7297 ||| | || || |||||||| || || || Sbjct 3614 TTGTCATTGCTACTGGTGAGACTCACTCGGT 3644 >seq6392 Length=4631 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 105595 ATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTT 105654 ||||||||| |||||||| || || | ||||| || || | |||||| |||| |||||| Sbjct 4004 ATAGTACATGCCGGTCTTCAGACCCTTCTTCCATGCATAGAAATGCATTGAAGTGAGCTT 4063 Query 105655 GGACATCGTTGGACTTTCC-ATGAAAAGATTCATACTTTGACTCTGGTCAATGAAGCGAC 105713 || || ||||| || | || || | || | ||| |||||||||||||||||| || Sbjct 4064 GG-CAAAGTTGGGCTCGGCGATAAAGACGTTGAAACTCTGACTCTGGTCAATGAAGGCAC 4122 Query 105714 CACGTTGTGCCGCCATATCAAT 105735 |||| | || ||||| || || Sbjct 4123 CACGGTCGGCTGCCATGTCGAT 4144 >seq2691 Length=892 Score = 91.5 bits (100), Expect = 2e-13 Identities = 184/273 (67%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 9430 ||| || ||||| |||||||| ||||| ||||| | | | ||| || |||||||| Sbjct 407 GGCGTCGATCTCGTCAATGAACACAATGCATGGAGCACTCTTGCGTGCCTGCTCAAAGAG 348 Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9490 |||||||| | | | || ||||| ||||||||||| ||||||| | | || Sbjct 347 GTCGCGAACACGTGCCGGTCCGACACCGACAAACATCTCGACAAAGTCCGAACCAGAGGT 288 Query 9491 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550 | ||| || || || | ||| || ||| | || |||||| | ||||| || || Sbjct 287 CGAGTAGAATGGCACGTTGGCTTCGCCAGCAGTTGCCTTGGCGAGCAACGTCTTTCCGGT 228 Query 9551 ACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTATCT 9610 || || || |||| |||||| ||||| |||||||||||| | | ||| | Sbjct 227 TCCAGGTGGTCCGATCAGGATGGCACCGCGTGGGATCTTGGCGCCAATGTCGTGGTACTT 168 Query 9611 CTCAGGTTGCTTGAGAAAATCCACAATCTCTTC 9643 || || | |||||| || | |||| ||| || Sbjct 167 CTTGGGATCCTTGAGGAAGTTGACAAACTCCTC 135 >seq271 Length=183270 Score = 91.5 bits (100), Expect = 2e-13 Identities = 271/411 (66%), Gaps = 18/411 (4%) Strand=Plus/Plus Query 9185 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9244 || || ||| ||||| || || ||||| || | || ||| || | ||| || || Sbjct 17958 GACCTGACGGTCAAAACGGCCCGGACGCAGCAAGGCCGGATCGAGAACATCGGGACGGTT 18017 Query 9245 CGTCGCGGCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAA 9301 ||||| ||||| | | | ||| ||||| || |||||||||||||| || Sbjct 18018 GGTCGCAGCGATCAGGATGACGCCT---TCATTGGCCTCGAAACCATCCATCTCGACCAG 18074 Query 9302 AAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATAC-CACCAGCACTGCGTT 9360 || ||||| | || ||||| ||||| ||||| || | | | ||| || | ||| | Sbjct 18075 CAGCTGGTTCAGCGTCTGTTCGCGTTCGTCATT-GCCGCCGCCCAGACCGGCGCCGCGAT 18133 Query 9361 GCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATT----TTCGCGG 9416 | || || ||||| || || || ||||||| || || ||| ||| ||||| Sbjct 18134 GACGGCCGACCGCATCGATTTCGTCGATGAAGATGATGCAGGGTGCATTCTTCTTCGCCT 18193 Query 9417 GCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAG 9476 | ||| || | || || || | || || ||||| || ||||| || || ||| Sbjct 18194 G----TTCGAACATGTCACGCACACGCGATGCACCGACACCGACGAACATTTCAACGAAG 18249 Query 9477 TTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAG 9535 | | ||| | || | || ||| || ||||| | |||||| || ||||| || || || Sbjct 18250 TCGGAACCGG-AGATGGTGAAGAACGGCACATTGGCTTCACCGGCGATGGCGCGCGCCAG 18308 Query 9536 AAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAAT 9586 ||| |||||||| ||||| || ||| |||| || | || || ||||| Sbjct 18309 AAGCGTCTTACCGGTACCGGGAGGACCGACGAGCAGCACGCCGCGCGGAAT 18359 >seq3533 Length=1137 Score = 89.7 bits (98), Expect = 6e-13 Identities = 145/208 (70%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| |||||||| || || || || || || || ||| |||||| Sbjct 951 GCAAAGTCGCAGTGTAGACCCTCGTCACGACTGATCAGCTCGTTGGAAAAGGTAAGGCCT 892 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| | ||||| ||||||||||| || || || || || ||| |||||||||| Sbjct 891 GGCATTAAACCCCTTTTCTTCAACCAGTAGATGGCACAAAAGCTGCCGCTGAAGAAGATA 832 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAAC 117453 ||||| || ||||| || | | || |||||||| || | ||| || ||| | | Sbjct 831 CCCTCAACCGCAGCAAATGCCACCAAACGTTCGGCGAATGAACAAGAGTTGGTG---ATC 775 Query 117454 CATTTCATTGCCCATTTCGCCTTCTTCT 117481 || || ||||| | |||||||||| Sbjct 774 CAGCGCAGCGCCCACTCTGCCTTCTTCT 747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589772632649480