Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_014900.1 Length=40986 Score E Sequences producing significant alignments: (Bits) Value seq40 605 7e-169 seq373 172 1e-38 seq501 93.3 1e-14 seq62 86.0 2e-12 >seq40 Length=14228 Score = 605 bits (670), Expect = 7e-169 Identities = 757/1028 (74%), Gaps = 10/1028 (1%) Strand=Plus/Plus Query 13068 CATCACCCGAATATCTCATCAGGCCATTAGCTGGCTAACCGTGCTTCCTATAGGTCTGCG 13127 ||| |||| || |||||||| | ||||| || ||||| |||||||| ||||||| Sbjct 8414 CATTACCCAAAAGCCTCATCAGCACGC-AGCTGATTATCCGTGTTTCCTATACGTCTGCG 8472 Query 13128 GCATGCTTCCAATCACCTTTCCAAAGACAAAAACCCTATTCATTTCATCTCTTTCAATTG 13187 |||| || ||||| ||||| || || | || |||| ||||| || ||| | || || | Sbjct 8473 GCATACTGCCAATAACCTTCCCGAAAATGAACACCCGGTTCATCTCGTCTTTCTCGATCG 8532 Query 13188 GGTCCCAAGCTGAATAACTCTTATTATCAGATATGACCAATAGTTTATCTTTCATCTTCT 13247 ||||||| | ||| || ||||| |||||||| || |||| ||| |||||||||||| | | Sbjct 8533 GGTCCCACGGTGAGTAGCTCTTGTTATCAGAGATAACCAGTAGCTTATCTTTCATCATTT 8592 Query 13248 GGAGCCGCTTAACATGTGCGGTATCGTCATAGAGGAAGGCGTATATCCCATCCCCATCGA 13307 | || ||||| ||||| || || ||||| || || || || || || ||||| || |||| Sbjct 8593 GCAGGCGCTTTACATGGGCTGTGTCGTCGTACAGAAACGCATAGATACCATCACCGTCGA 8652 Query 13308 AGTTTTTGATGCTTACGTCTACAAACAACAAATCTCCTGGTTCAATAGTTCCTGACATGC 13367 | ||| | | | || || |||| || ||| |||||||| || ||||||||||||| Sbjct 8653 AAGATTTAACCGTGATATCAACGAACAGCAGATCACCTGGTTCGATCGTTCCTGACATGC 8712 Query 13368 TATCCCCACGCACATTTATGATGCGGATATTTTCAGCCTTTCTACCATCAAACATGTGTC 13427 | || || ||||| || ||||||||||||||||| ||||| || ||||| |||||||| | Sbjct 8713 TGTCACCGCGCACGTTAATGATGCGGATATTTTCCGCCTTCCTGCCATCGAACATGTGAC 8772 Query 13428 TGGCATCGTCCTGCGAATACTCAACCGAGCGGAGTATTTCCACGAATTCTCGATTGATAA 13487 |||||||| ||| |||||||||||||| || | |||||| || || || ||||| | Sbjct 8773 GAGCATCGTCAAACGAGTACTCAACCGAGCGTAGAACTTCCACAAACTCACGGTTGATGA 8832 Query 13488 CGCCAGGACCCGCGCTTACTTCAAGATCTAGGATATCGAT-TTTAAATGTGTTTGATGAT 13546 | || || || || || ||||| | ||| || | || || || || | | || ||| Sbjct 8833 CACCCGGTCCGGCACTGACTTCTATATCAAGAACGTCAATCTTGAAGTATTTTGAATGGC 8892 Query 13547 GGAGATGC--GTTTATCGGAGTAGTT--CCATCTTTTTTCATAGGACCAATTCCGGTAGA 13602 || | || | || | || | ||| || || ||| |||| || || || || | || Sbjct 8893 TGACA-GCAGGCTTCCCTGA-TTGTTGACCGTCATTTCTCATCGGGCCTATGCCTGATGA 8950 Query 13603 CAACCATTCCGAACTAACACCTAACGCGTTTGCTATTTCAACAATCTTTGTTGACCCACG 13662 | |||||| | | |||||| || || || |||||||||||||| |||||||| || || Sbjct 8951 GAGCCATTCTGTTCGAACACCCAATGCATTAGCTATTTCAACAATTTTTGTTGAGCCGCG 9010 Query 13663 AGCGTTTCCACTTGTCAAACGCCAGATCGTTGGCTGAGCAACGCCTGACGCTTTAGCAAG 13722 ||||| || ||||||| | |||||| || || ||||| ||||| ||||| || ||||| Sbjct 9011 CGCGTTGCCGCTTGTCAGTCTCCAGATTGTGGGTTGAGCTACGCCAGACGCCTTTGCAAG 9070 Query 13723 AGCACCTTGAGACATACCAGCTAGTTCCATTGCCTTGTTGAGACGGTCAGAGAGAGTTTC 13782 ||| ||||||||||| |||| | ||||||| || ||| | || |||| |||||||| Sbjct 9071 AGCGCCTTGAGACATTCCAGATTGTTCCATCGCTAGGTTTAAGCGATCAGCAAGAGTTTC 9130 Query 13783 TTTTTTCATAATATTCAATTTATACGCTTGCGTATTAATGGTCAAAACACGTTTTGCTAT 13842 ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 9131 TTTTTTCATAAGTTTTAATTTATACGCTTGCGTATTGATGGTCAAAACACGTTTTGCTAT 9190 Query 13843 TGCTTTGATTAATACTCATTGCTATTATTTGTTGTGTGTTATACGAAAGGGAATAAGCAA 13902 ||||| | ||||||| ||||||||||||| || || |||| || ||||| || Sbjct 9191 TGCTTGGGTTAATACGCATTGCTATTATTCATTCATTGCAATACCAATAGGAATTGATAA 9250 Query 13903 TGACTAACAAAGCAATACAAAAAGCTGTTGCCATTGCAGGAAGCCAGCAAAAACTCGCCT 13962 |||| || || | || ||| || | ||| |||| || || || ||| || Sbjct 9251 TGACAAATCAAACCATTCAACTCGCAATCAGTATTACAGGTAGTCAAAAACGACTGGCAG 9310 Query 13963 CTTTGTGTGGAGTTAAGCAGCCAACTGTATGGCGTTGGTTACATGGTGGCGGCATTGACG 14022 | | || || || || || || || ||||||||| |||| |||||||| ||||| | Sbjct 9311 ATCTATGCGGTGTAGCCCAACCCACAGTTTGGCGTTGGCTACACGGTGGCGGAATTGATG 9370 Query 14023 CTAAGTATGTGGCAGCAATCGTAAAAGCTACAGGAGGAAGAATTAAAGCCAG-AGAACTT 14081 | ||||| ||| || ||| || || |||| |||||| |||| ||| || Sbjct 9371 CCCGCTATGTAATGAAAATTGTCTCAGCCACTGGTGGAAAGATTAAA-CCAGCAGATATT 9429 Query 14082 CGTCCTGA 14089 ||||| || Sbjct 9430 CGTCCCGA 9437 Score = 89.7 bits (98), Expect = 1e-13 Identities = 68/78 (87%), Gaps = 3/78 (4%) Strand=Plus/Plus Query 4641 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCATATGaaaaaaaTCCCCGCGAGTGCGAG 4700 ||||||||||||||||||||||||||||||||| || ||| |||||| || |||||||| Sbjct 3048 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 3107 Query 4701 GTT--TGTT-ATTGCTGC 4715 | | |||| |||||||| Sbjct 3108 GATGCTGTTCATTGCTGC 3125 >seq373 Length=63667 Score = 172 bits (190), Expect = 1e-38 Identities = 237/331 (72%), Gaps = 3/331 (1%) Strand=Plus/Plus Query 21165 AGCACCCCGTTTCTTCGGAGGTGG---TATGGCAAAACGTATGAATGACGACCATAAAAT 21221 ||||||||||| |||||||| ||||||||| | |||| | ||| | | | || Sbjct 8186 AGCACCCCGTTAACCCGGAGGTGAACCTATGGCAAAGCATATGCAAGACAAAGAAAGCAT 8245 Query 21222 TGTAGGCCTGTCCTGGCTAATTCTGCTTGGAATTGCCTGCTGGGGCGGCTTAGTTCGCTA 21281 | || | ||||||| |||||| ||||| | ||||||||| | || || | Sbjct 8246 GGCCGGAATCACCTGGCTGGCTCTGCTGATCATTGCTGGTTGGGGCGGCCTTGTCCGATT 8305 Query 21282 CCTGATTGACGTAAAGCAGAATAAAGCAACATGGAGTTGGATAAACGCTTTCGCACAGAT 21341 |||||| || || |||||| ||||||| |||||| |||||||| ||||| || || || Sbjct 8306 CCTGATGGATGTGAAGCAGGGCAAAGCAAAATGGAGCTGGATAAATGCTTTTGCGCAAAT 8365 Query 21342 CGCGGTATCTGGCTTTACCGGTCTGATTGGCGGGTTGATAAGCGTTGAGGGTGGGCTTAG 21401 | ||| || | |||||||| | ||||| ||| | || ||| |||| |||| || || Sbjct 8366 TGTGGTTTCGGCTTTTACCGGGGTCATTGGTGGGCTCATCAGCATTGAAAGTGGCCTGAG 8425 Query 21402 TTTTCACATGATCCTGGTAACGTCGGGAATTAGCGGGGCAATGGGTTCCGTTGCTCTAAC 21461 | || ||||||| |||| || | || |||| || || ||||||||||| || || || Sbjct 8426 TATTTACATGATACTGGCCACTGCCGGTGTTAGTGGTGCTATGGGTTCCGTAGCGCTTAC 8485 Query 21462 TTACTTCTGGGAGCGTCTTACAGGGATGAAA 21492 || |||||||| || | || || |||||| Sbjct 8486 ATATTTCTGGGAACGAATCACCGGAATGAAA 8516 >seq501 Length=12468 Score = 93.3 bits (102), Expect = 1e-14 Identities = 97/128 (76%), Gaps = 11/128 (9%) Strand=Plus/Minus Query 3125 CTTATTTTTACT-GTGGGACATATTTGGGACAG----------AAGTACCAAAAATCGAG 3173 || |||||| || ||||||||||||||||||| || | ||||||| ||| Sbjct 10997 CTGATTTTTCCTTGTGGGACATATTTGGGACATCTTCTGCAAAAATTTGCAAAAATTGAG 10938 Query 3174 TCAATTTGTCGAGCATGTTCAGTCAGGTGATTTGGTGCCAGATGAGCATATCTGCGAACC 3233 |||||||| || || || ||||| | || || |||||||| |||||||||| || ||| Sbjct 10937 TCAATTTGACGTGCGTGCTCAGTTAAATGGTTAGGTGCCAGGTGAGCATATCGACGGACC 10878 Query 3234 ATTTCGAT 3241 |||||||| Sbjct 10877 ATTTCGAT 10870 >seq62 Length=1393 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 3044 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 3095 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 25 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 76 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130989678110552