Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_015265.1 Length=37236 Score E Sequences producing significant alignments: (Bits) Value seq7329 257 4e-64 seq1891 165 2e-36 seq6417 156 1e-33 seq19415 147 5e-31 >seq7329 Length=1002 Score = 257 bits (284), Expect = 4e-64 Identities = 310/414 (75%), Gaps = 6/414 (1%) Strand=Plus/Plus Query 34249 GCAGCCATGCGGGCTTCATCCTGTACATGACCGACCCGGCCGACAAGCAGGAGGACGTCG 34308 |||||||||| || ||||| ||||||||||||||| |||| | ||| | |||||| ||| Sbjct 1 GCAGCCATGCCGGTTTCATTCTGTACATGACCGACGCGGCGCAGAAGGAAGAGGACATCG 60 Query 34309 ACAACCTGCGCGCGGCGCTGAAGAACGCGAAGGGGCCGGGCAACTTCCGGAACCTGTTCA 34368 || |||||| | || ||||||||| |||| ||||| |||||||| || |||||||| Sbjct 61 ACTCACTGCGCACCGCACTGAAGAACTCGAAAGGGCCAGGCAACTTTCGCAACCTGTTTG 120 Query 34369 TGTACGCGCCGAAGGGCAAGAAGGACGGGATCCAGCTGCTGCCGATCGGCGAGGTGGCGG 34428 ||||||||||| |||||||| ||||| || ||||| | ||| | ||||||| |||| Sbjct 121 TGTACGCGCCGGCAGGCAAGAAAGACGGCATTCAGCTCATCCCGGTGAGCGAGGTTGCGG 180 Query 34429 CGAAGGACGAGTTCTGGAACATCAAGAAGGTGA-CGGTCGAGGATCAGCTCGCGGCGCAC 34487 | |||||||| ||| | ||||| || | | | || || |||| |||||||||| Sbjct 181 CCAAGGACGAATTCAGCTCGATCAAAAACATCAGCCGT-GACGATCTGCTCGCGGCGTTG 239 Query 34488 CGCGTGCCGCCGCAGTTGATGGGGATCATCCCGTCGAACGCGGGCGGGTTCGGCGACG-T 34546 ||| | || |||||||||||||| ||| | ||| |||||||||||| || || | || | Sbjct 240 CGCATTCCACCGCAGTTGATGGGCATCGTGCCGCAGAACGCGGGCGGTTTTGG-GTCGTT 298 Query 34547 GCACAAGGCCGCCGAGGTGTTCAACGAGC-TCGAGATCGAGCCGCTGAAGGCGCGGCTGC 34605 || |||| || ||||| || || | |||| | |||||| || ||||| ||||| Sbjct 299 GCGGGAGGCTGCTGAGGT-TTGGGCGGTCAACGAGCTGGAGCCGTTGCAGGCGAGGCTGG 357 Query 34606 GGGAGGTGAACGACTGGCTCGGGATCGAGGTGGTGCGCTTCAGGGACTTCGAGC 34659 |||| ||||| ||||| || ||||| || | |||| ||| || |||| Sbjct 358 CCCAGGTCAACGAGTGGCTGGGTGAAGAGGTTGTCAGGTTCAAGGAGTTTGAGC 411 >seq1891 Length=1650 Score = 165 bits (182), Expect = 2e-36 Identities = 384/570 (67%), Gaps = 23/570 (4%) Strand=Plus/Minus Query 9451 TGTGCGAGCGCGGGCTGATGATGAAGGAAGGCACGCTGGTGGATGCGACGATCTTCGAGG 9510 || |||| || |||||| | || |||||||| | || ||||| ||| | || | Sbjct 1206 TGGGCGACCGAGGGCTGTCGCTGCGCCAAGGCACGATCGTCGATGCCACGCTGATCAA-- 1149 Query 9511 CTGCGCCG---TCCACGAAGAAC---GCCGGGAAGAGCCGTGACCCGGAGATGCATCAGA 9564 ||||||| || || |||||| | ||| ||| || |||||||| |||||||||| Sbjct 1148 -TGCGCCGAGTTCGACCAAGAACAAGGACGGTAAGCGC---GACCCGGAAATGCATCAGA 1093 Query 9565 CGAAGAAGGGCAACGACTGGTATTTCGGCATGAAGGCCCATGTCGGCGTCGACGCCGACT 9624 | |||||||| ||| | | || |||||||||||||| || |||| ||||| | || | Sbjct 1092 CCAAGAAGGGTAACCAGTACTACTTCGGCATGAAGGCGCACATCGGTGTCGATGATGAGT 1033 Query 9625 CGGGTCTGGTGCATAGCGTGGTCACCACGGCGGCCAACGAGCCGGACGTATCGCAGGCCC 9684 |||| ||||||| |||||||| |||||||||||||| | | || || | |||| | Sbjct 1032 CGGGCTTGGTGCACAGCGTGGTGGGCACGGCGGCCAACGTGGCCGATGTCACCCAGGTCG 973 Query 9685 ACGCCCTGCTGCACGGTCATGAGCAGGAAGCGTTTGGCGATGCGGGCTACACCGGCGTGG 9744 | ||||||||||| ||||| | | || ||| ||||| ||||||||||| | Sbjct 972 ATAAGCTGCTGCACGGCGATGAGAACATGGTCGGTGCCGACGCGGGTTACACCGGCGTCG 913 Query 9745 ACAAGCG-CGAGGAGATGAAGGGCAAGACGGTGAAGTGGCACGTGG-----CGCTCAAGC 9798 | || || | | | ||||| ||| | ||| | ||||| | | ||| || Sbjct 912 AGAAACGCCCTGAACATGAA-GGCCGGGGGGTCATCTGGCAGATCGCCGCCCGCCGTAGT 854 Query 9799 GCGGA-AAGATCAGGGCGATGCAGGAAGGTCCGCTGAAGGACCTCGTGATCGCGGTCGAG 9857 | | |||| || ||| || || | || | | | | | | | ||| Sbjct 853 ACTTACAAGA--AGCTTGAT-AAGCGCAGTGCTTTGTACAAAGCCAAGCGCAAGATTGAG 797 Query 9858 CGAACCAAGGCGCAGATCCGCGCCCGGGTCGAGCATCCGTTTCATGTCGTGAAGAACCTG 9917 ||||||| ||| | || ||| ||||||||||||||| | || | ||| || | Sbjct 796 AAGGCCAAGGCTCAGGTACGAGCCAAGGTCGAGCATCCGTTCCGGGTGATCAAGCGCCAG 737 Query 9918 TTTCGTCATCGCAAGGTGCGCTACAAGGGTCTAGCCAGGAACACGGCACAGCTGTTCAGT 9977 || || || |||||||||| | ||||| || | ||||||||| || ||| | | Sbjct 736 TTCGGTTATGTGAAGGTGCGCTTCCGTGGTCTGGCGAAGAACACGGCGCAACTGGTGACG 677 Query 9978 CTGTTCGCGCTGGCGAACCTGGTGATCGCG 10007 |||||||||||| |||||||| ||| ||| Sbjct 676 CTGTTCGCGCTGTCGAACCTGTGGATGGCG 647 >seq6417 Length=1149 Score = 156 bits (172), Expect = 1e-33 Identities = 590/903 (65%), Gaps = 57/903 (6%) Strand=Plus/Minus Query 9132 TTTCTGGCCGAGATGGAGAAGGTCGTCCCTTGGTCGCGGCTGCTGTCGGTGATCGGGCCG 9191 || ||| ||||||||| ||| || || ||| | | || | | |||||| ||| Sbjct 1064 TTCCTGATCGAGATGGATCGGGTGGTGCCGTGGAAGGGCTTGATTGCTTTGATCGAGCCA 1005 Query 9192 TATTACCCGAAGGGCGAGCGTGGCCGGCCGCCGATTGGCCTGGAACG-GATGCTGCGGAT 9250 |||| ||||| || || ||||||| ||| | | | | || | ||||||||| | Sbjct 1004 CATTATCCGAAAGGTGAAGGTGGCCGTCCGGCC-TACCCGTTGATGGCGATGCTGCGTGT 946 Query 9251 CTACTTGCTGCAGCAGTGGTACGGGTTGTCGGACGAAGGGCTTGAAGATGCGCTCTACGA 9310 | |||||||| | |||| ||| | || || | | || || ||||| ||||| Sbjct 945 GCATCTGCTGCAGAACTGGTTCGGCTACAGCGATCCAGCGATGGAGGAAGCGCTGTACGA 886 Query 9311 CAGCATCGCGATGC-GCGCC--TTCGCGGGCATCGACCTGGCGCGCGAGAACGTGCCGGA 9367 | || |||| | ||||| || || || | |||||| |||| | || || Sbjct 885 AACCA---CGATCCTGCGCCAGTTTGCCGGGCTGAACCTGGAGCGCA------TCCCCGA 835 Query 9368 CGCCACCACGCTGTTGAAATTCCGGCGCCTGCTGGTCGAGCACGCACTGACGCGAAAGC- 9426 || ||||| | | || ||||| ||| |||||| | |||| ||| || | || Sbjct 834 CGAAACCACCATTCTCAACTTCCGCCGCTTGCTGGAGAAACACGAGCTGGCG-GCCGGCA 776 Query 9427 TGTTCGACGAGATC---GGC-ATCGAGTTGTGCGAGCGCGGGCTGATGATGAAGGAAGGC 9482 | ||| | ||| ||| ||| || |||| ||||| ||| | || | ||| Sbjct 775 TCCTCGCTGTCATCAATGGCTATC----TGGGCGACCGCGGCCTGTCGCTGCGCCAGGGC 720 Query 9483 ACGCTGGTGGATGCGACGATCTTCGAGGCTGCGCCGTCC-ACGAAGAAC---GCCGGGAA 9538 || | || ||||| ||| | || | || || | || | || |||||| | ||| || Sbjct 719 ACCATCGTCGATGCAACGCTGATCAATGC-GCCCAGTTCGACCAAGAACAAGGACGGCAA 661 Query 9539 GAGCCGTGACCCGGAGATGCATCAGACGAAGAAGGGCAACGACTGGTATTTCGGCATGAA 9598 | || |||||||| ||||| ||||| |||||||| ||| | | ||||| |||||||| Sbjct 660 GCGC---GACCCGGAAATGCACCAGACCAAGAAGGGAAACCAGTATTATTTTGGCATGAA 604 Query 9599 GGCCCATGTCGGCGTCGACGCCGACTCGGGTCTGGTGCATAGCGTGGTCACCACGGCGGC 9658 |||||| |||||| ||| | ||| |||||||||||||| ||||| || ||||||||| Sbjct 603 GGCCCACATCGGCGCCGATGACGAATCGGGTCTGGTGCACAGCGTAGTGGGCACGGCGGC 544 Query 9659 CAACGAGCCGGACGTATCGCAGGCCCACGCCCTGCTGCACGGTCATGAGCAGGAAGCGTT 9718 ||| | | |||| || | |||| || ||||||| || | || | | | | Sbjct 543 CAATGTGGCGGATGTCACCCAGGTGGACAAATTGCTGCATGGCGACGAAAACGTGGTCTG 484 Query 9719 TGGCGATGCGGGCTACACCGGCGTGGACAAGCGCGAGGAG-ATGAAGGGCAAGACGGTGA 9777 | |||||| ||||||||||| || || ||||| ||| ||||||| | || || | Sbjct 483 CGCCGATGCAGGCTACACCGGTGTCGAAAAGCGGCCCGAGCATGAAGGACGTGA-AGTTA 425 Query 9778 AGTGGCACGTGGCGCTCAAG-CGCGG-------AAAGATCAGGGCGATGCAGGAAGGTCC 9829 ||||| |||||| || | ||| | ||| | | |||| ||| | Sbjct 424 TCTGGCAGGTGGCG-GCACGCCGCAGCACCTACAAAAAAC---TCGAT-----AAGCGCA 374 Query 9830 GC-TGAAGGACCTCGTGATCGCGGTCGAGCGAA----CCAAGGCGCAGATCCGCGCCCGG 9884 || || | || | | ||| || ||| ||||||| ||| | |||||| | Sbjct 373 GCGTGCTGTACAAAGCCA-AGCGCAAGATTGAAAAGGCCAAGGCTCAGGTGCGCGCCAAG 315 Query 9885 GTCGAGCATCCGTTTCATGTCGTGAAGAACCTGTTTCGTCATCGCAAGGTGCGCTACAAG 9944 |||||||||||||| | || | ||| || ||| || | ||||||||||| Sbjct 314 GTCGAGCATCCGTTCCGGGTAATCAAGCGCCAGTTCGGTTACACCAAGGTGCGCTTTCGC 255 Query 9945 GGTCTAGCCAGGAACACGGCACAGCTGTTCAGTCTGTTCGCGCTGGCGAACCTGGTGATC 10004 || | |||| |||||||| || ||| | | |||||||| ||| |||||||| ||| Sbjct 254 GGCTTGGCCAAAAACACGGCGCAACTGGTGACACTGTTCGCTCTGTCGAACCTGTGGATG 195 Query 10005 GCG 10007 ||| Sbjct 194 GCG 192 >seq19415 Length=1017 Score = 147 bits (162), Expect = 5e-31 Identities = 261/378 (69%), Gaps = 2/378 (1%) Strand=Plus/Minus Query 33247 CGCTATCGCGTGACCTACATCGGCATTGACACGACCGGGATCGGGCAGGGCGTGTATCAG 33306 ||||| | |||||||||||||| || || | ||||| | || |||||| ||| Sbjct 986 CGCTACTGGGTGACCTACATCGGGATCGATATCACCGGCACGGGTTCCGGCGTGGCGCAG 927 Query 33307 CTCGTCACGAAGTTTTTCCCGGCCGCGACGCCGTTCCACTACTCGGTGGAAATCAAGACC 33366 || || | | |||| |||||| | || ||||| |||||| ||| |||| ||| Sbjct 926 CTGGTGAAGCAGTTCTTCCCGAACATCACCACGTTCAGCTACTCACCCGAAGTCAAAACC 867 Query 33367 GCGCTGGTGATGAAGGCGCAGAACGTGATCCGCAAGGGTCGGCTCGAGTTCGACGCCGGC 33426 |||||| ||||||| | |||| ||| || || |||| |||||||| || ||| Sbjct 866 CGCCTGGTGCTGAAGGCTTACGACGTCATCAAAAACGGCAGGCTGGAGTTCGATGCGGGC 807 Query 33427 TGGAACGATCTCGCCGCGTCATTCATGGCGATCAAGAAAACCATCACGCCCAGCGGCCTG 33486 |||| ||| | || |||||| ||||| ||| ||||| ||||| || ||| | | Sbjct 806 TGGACGGATATGGCGCAGTCATTGATGGCTATCCGCAAAACAATCACCGCCTCCGGGC-G 748 Query 33487 CA-GGTCACGTACAAGGCGAGCCGCTCGGAAGAAGCGAGCCACGGCGATCTCGCCTGGGC 33545 || | |||| |||| ||| | ||| | || || || |||| | ||| || || ||||| Sbjct 747 CATGTTCACTTACACGGCCGGTCGCACAGACGAGACGGGCCATGCCGACCTAGCGTGGGC 688 Query 33546 GTGCATGCACGCGCTGGCGAACGAGCCGCTCGAAGGGGCGACTGCCACCAATACCGGATT 33605 | | ||||||||| ||||| || || |||||| ||| | | || |||||||| Sbjct 687 GCTGTTCCACGCGCTGCACAACGAACCCCTTGAAGGGCAGACCACGGCGAACACCGGATT 628 Query 33606 CATGGAGATTTTCTGATG 33623 |||||| | |||||| Sbjct 627 TATGGAGTCCTACTGATG 610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118993700458052