Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_015266.1 Length=40555 Score E Sequences producing significant alignments: (Bits) Value seq7329 242 1e-59 seq19415 113 1e-20 seq2048 82.4 2e-11 >seq7329 Length=1002 Score = 242 bits (268), Expect = 1e-59 Identities = 305/416 (73%), Gaps = 6/416 (1%) Strand=Plus/Plus Query 30798 AGCCACGCCGGCTTCATCCTCTACATGACCGACGCGGCGCAGAAGCAGGAGGATGTCGAC 30857 ||||| ||||| ||||| || |||||||||||||||||||||||| | ||||| ||||| Sbjct 3 AGCCATGCCGGTTTCATTCTGTACATGACCGACGCGGCGCAGAAGGAAGAGGACATCGAC 62 Query 30858 AACATGCGCACGGCGTTGAAGAACGCGAAGGGGCCGGGCAATTTCCGCAACGTGTTCATG 30917 ||||||| || |||||||| |||| ||||| ||||| || |||||| |||| || Sbjct 63 TCACTGCGCACCGCACTGAAGAACTCGAAAGGGCCAGGCAACTTTCGCAACCTGTTTGTG 122 Query 30918 TACGCGCCGGGCGGGAAAAAGGACGGTATCCAGCTCATCCCAGTGTCCGAGGTCGCGGCG 30977 |||||||||| || || || ||||| || ||||||||||| ||| |||||| ||||| Sbjct 123 TACGCGCCGGCAGGCAAGAAAGACGGCATTCAGCTCATCCCGGTGAGCGAGGTTGCGGCC 182 Query 30978 AAGGACGAGTTCTTCAACATCAAGAACGTGACGCGCGACGACCTGCTCGCCGCGCATCGC 31037 |||||||| ||| | ||||| ||| | | || ||||| |||||||| ||| ||| Sbjct 183 AAGGACGAATTCAGCTCGATCAAAAACATCAGCCGTGACGATCTGCTCGCGGCGTTGCGC 242 Query 31038 GTGCCGCCGCAACTGCTCGGTATCGTGCCGAGCAATTCGGGCGGGTTCGGCAC---GCCG 31094 | || ||||| || | || ||||||||| || ||||||| || || | || | Sbjct 243 ATTCCACCGCAGTTGATGGGCATCGTGCCGCAGAACGCGGGCGGTTTTGGGTCGTTGCGG 302 Query 31095 GACACCGCGGCGCGCGTGTTCGGTCGCAACGAAATCAAGCCGCTGCAGGCCCGCTTCGCC 31154 || | || | | | || |||| |||||| | ||||| ||||||| | | ||| Sbjct 303 GAGGCTGCTGAG-GTTTGGGCGGT--CAACGAGCTGGAGCCGTTGCAGGCGAGGCTGGCC 359 Query 31155 GAGCTGAACGACTGGCTCGGCGAAGAGGTCGTGTTGTTCGACGATTACGAGATTCC 31210 || | ||||| ||||| || |||||||| || |||| | || | ||| |||| Sbjct 360 CAGGTCAACGAGTGGCTGGGTGAAGAGGTTGTCAGGTTCAAGGAGTTTGAGCTTCC 415 >seq19415 Length=1017 Score = 113 bits (124), Expect = 1e-20 Identities = 216/316 (68%), Gaps = 2/316 (1%) Strand=Plus/Minus Query 29817 CTATATCGCGATCGACACGACGGGCATGGGGCAGGGCGTCTATCAGCTCGTGCGGAAGTT 29876 ||| |||| |||||| | || |||| ||| ||||| ||||| ||| | |||| Sbjct 972 CTACATCGGGATCGATATCACCGGCACGGGTTCCGGCGTGGCGCAGCTGGTGAAGCAGTT 913 Query 29877 CTACCCGGCGGCCGTTGCATTGAACTACTCGCCCGAGGTCAAAACTCGCCTTGTGCTGAA 29936 || |||| | | || | |||||| ||||| |||||||| ||||| |||||||| Sbjct 912 CTTCCCGAACATCACCACGTTCAGCTACTCACCCGAAGTCAAAACCCGCCTGGTGCTGAA 853 Query 29937 GGGGCAATCCGTCATCCGCAACGGCCGCCTGCAATTCGACGCGGGATGGACCGACCTGGC 29996 || | ||||||| |||||| | ||| | ||||| ||||| ||||| || |||| Sbjct 852 GGCTTACGACGTCATCAAAAACGGCAGGCTGGAGTTCGATGCGGGCTGGACGGATATGGC 793 Query 29997 CGCGGCGTTCATGGGAATCAAACAGACCATGACGGCGAGCGGCCGCCACGCAACGTACAC 30056 | | || |||| ||| | || || || || ||| ||| || ||||| Sbjct 792 GCAGTCATTGATGGCTATCCGCAAAACAATCACCGCCTCCGGGCGCATGTTCACTTACAC 733 Query 30057 CGCCGACCGCAACGAAGAGACGGGCCACGCCGACCTGGCATGGGC-CTGCCTGCACGCGA 30115 |||| |||| || ||||||||||| |||||||| || ||||| ||| | |||||| Sbjct 732 GGCCGGTCGCACAGACGAGACGGGCCATGCCGACCTAGCGTGGGCGCTG-TTCCACGCGC 674 Query 30116 TCGACCGCGAACCGCT 30131 | || |||||| || Sbjct 673 TGCACAACGAACCCCT 658 >seq2048 Length=13079 Score = 82.4 bits (90), Expect = 2e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 36111 GTTCCACTCGCTAGTGAATACGCATTCACCGCC-ATGAGCCTCAAAACCAAGGCGAATGC 36169 |||||||||||| || || ||||| | ||||| ||| || ||||||||| ||| || | Sbjct 8562 GTTCCACTCGCTGGTAAAAACGCACTGCCCGCCGATG-GCTTCAAAACCACTGCGGATCC 8504 Query 36170 CACCGATTCCGGCGAACAGATCGATGAAACGGAA 36203 | || || ||||| ||||||||||| |||||||| Sbjct 8503 CGCCAATACCGGCAAACAGATCGATAAAACGGAA 8470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129610940412358