Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_015269.1 Length=118351 Score E Sequences producing significant alignments: (Bits) Value seq2261 122 7e-23 seq2516 86.0 5e-12 >seq2261 Length=3986 Score = 122 bits (134), Expect = 7e-23 Identities = 139/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 27375 ATTACATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTG 27434 ||||||| | |||||| || ||||| ||||||| || | ||| ||||| ||||| | Sbjct 688 ATTACATGGTCTGAGTGAAGGTACGGGTAATAACATCCTGCTGCTGTTCTTTGGTCAGGG 629 Query 27435 CGTTAAATCGAACAGCATAGCCAGAGACACGGATAGTCAATTGAGGATATTTTTCAGGAT 27494 |||||| || || || |||||||| |||||||| |||| || ||||||||||| || | Sbjct 628 AGTTAAAACGTACGGCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTCCGGGT 569 Query 27495 GTTTCTGTGCATCCAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCAC 27554 || | || || | ||| || ||| | | || || || || ||||||||||||| Sbjct 568 TTTCCATCGCGTCGAGCAGCATTTCGCGGTTCATGACGTTCACGTTCAGGTGCTGACCAC 509 Query 27555 CTTCGAT 27561 ||||||| Sbjct 508 CTTCGAT 502 >seq2516 Length=21774 Score = 86.0 bits (94), Expect = 5e-12 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 27389 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCGTTAAATCGAACA 27448 ||||| ||||| || |||||| ||| ||||| | ||||| | ||| || || || Sbjct 1948 GTAAAGGTACGGGCGATTACGTCGCGCTGCTGTTCCGGCGTCAGAGAGTTGAAGCGTACC 1889 Query 27449 GCATAGCCAGAGACACGGATAGTCAATTGAGGATATTTTTCAGGATGTTTCTGTGCATCC 27508 || ||||| || ||||| || |||| || ||||||||||| ||||| | || ||| Sbjct 1888 GCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATGCTCAACCGCGTCC 1829 Query 27509 AAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCTTCGA 27560 | || || || | | ||| || || || ||||||||||| ||||||| Sbjct 1828 AGCAGGGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTCGA 1777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378468155879864