Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_015295.1 Length=47279 Score E Sequences producing significant alignments: (Bits) Value seq4 215 2e-51 seq6347 113 1e-20 seq82 89.7 2e-13 seq11225 87.8 5e-13 >seq4 Length=38681 Score = 215 bits (238), Expect = 2e-51 Identities = 503/744 (68%), Gaps = 21/744 (3%) Strand=Plus/Minus Query 29850 ACTGCGTTAACGAGCTGTGCTTCATAGCCCAAAGTGCCGTTTACAAGGTGTGTTTTTTGA 29909 || ||||| || ||||| |||||||| || | |||||||| || | |||||||| || Sbjct 742 ACCGCGTTTACCAGCTGCGCTTCATAACCAAGCGTGCCGTTAACCACATGTGTTTTCTGC 683 Query 29910 GCCACGGCGAAGGGATTCATTCCCCACTGCGCGGCCTGTAGCGCAACCGCCAGGCAATCA 29969 ||||| ||||| || ||||| ||||||||||| ||||| | | || |||||||| ||| Sbjct 682 GCCACAGCGAACGGGTTCATGCCCCACTGCGCCGCCTGCATGGTCACAGCCAGGCAGTCA 623 Query 29970 GCAGGCTTCCCGGCGAGGTGGGCGGGTACTGTTGTTCTGCCCTGCGCCATGA-CCTCGGC 30028 |||||||| || || ||||| || || || || | | | | ||||| | | | Sbjct 622 GCAGGCTTTCCTGCCAGGTGCGCAGGAACGGTGGCCTTACTGTCAGCCATCAGGGTTGCG 563 Query 30029 AAACGCCTGTAGTTTTTGCA-GTCCTGACGGGCTAAATATTGCCGCTTTTGTG---TCGG 30084 ||||| | || | || | ||| | ||||| || |||||||| ||| ||| Sbjct 562 AAACG-CACCAGGCGGTCCATGCCCTCA-GGGCTGAAGATTGCCGCAGCGGTGCCAACGG 505 Query 30085 CCTCATTA-GCCGGACTGTGA--ACAATTTCAGTGCTCATACGTA---ATCCTTTTTCTT 30138 | | || | ||||| | || || |||||||||||| ||||| ||| Sbjct 504 TTGCGCCAGGCTGCGATGTGATTGCGATGTCGTTGCTCATACGTACATATCCTGTTTGCG 445 Query 30139 CGCCCAGGCTGGGCGTGTGATTTCTTCAATGCCGCCCCA---GCTATCACTAACCCGGCA 30195 ||||| | |||||| |||| ||||| || ||||| || | ||| | ||||| Sbjct 444 TGCCCACTCGGGGCGTTTGATAATTTCAAATCCACCCCATTCGCCA-GACT--CACGGCA 388 Query 30196 TTCGTGGTATGTGTTCAGACTGTTGCGGAATAAATCATGGCCTGTTGCCACATCATCCGC 30255 | |||||| || |||||| |||||| | |||| || | | || || | || Sbjct 387 CTGGTGGTAGGTATTCAGATCCCGGCGGAACAGTGCATGCCCGGCGTCAACGTCCTGTGC 328 Query 30256 AGCGAGCTGGAACGTCCGCACGGGATATCGACCGCAGTTGATCGTCTCGCTCACGGCAAT 30315 | | || | ||| ||||| || || || ||||||| ||| || |||||||| || | Sbjct 327 ATCCAGTTCGAAAACGCGCACCGGGTAGCGGCCGCAGTCGATGGTTTCGCTCACTGCCAG 268 Query 30316 AAAAATAAACATGGGATATTCGCCGAAGTGCTTCAGATACCCTTCGCGGTACATGGCGTC 30375 |||| || | | || ||| | || | | |||||||||||||||||||| Sbjct 267 GAAAAAGAATCCGTGCGGCTCACCGGTGGTCTGCTGCGCGCCTTCGCGGTACATGGCGTC 208 Query 30376 TTGCATGTGATAGCGGAATTCTTCGACATGTCGCGGGAATCGCTCCATATCTGCAACTTT 30435 || | ||| || |||||||| |||| || || | ||| |||||||| || ||||| || Sbjct 207 CTGAACGTGGTACCGGAATTCCTCGATGTGGCGGGAGAACCGCTCCATGTCCGCAACCTT 148 Query 30436 TTTCACGTCAACAACAACTGGCTGGCTAGTTAGAAACTTATCCGGCCTGAAT-CTGCACA 30494 || ||||| | | ||| || || | | || ||||||||| | |||| | ||||| Sbjct 147 CTTTACGTCCAGCAGAACCGGATGATTCTTCAGGCGCTTATCCGGGC-GAATGCGGCACA 89 Query 30495 GCTCCCCGGTTTCGTCATCATTCCAGTAGATAGAAGACTCGCAATGCCCGTCTGCCTCCA 30554 |||| |||||||| ||| |||||||| || | ||||| || || ||||| | Sbjct 88 GCTCTCCGGTTTCCGAATCCGTCCAGTAGTGCGACGCTTCGCAGAAACCTTCCGCCTCAA 29 Query 30555 GCAACCACCGTGCGGCGGGGTGGG 30578 | | ||| || || || || |||| Sbjct 28 GAAGCCAGCGCGCCGCCGGATGGG 5 Score = 185 bits (204), Expect = 3e-42 Identities = 257/355 (72%), Gaps = 4/355 (1%) Strand=Plus/Minus Query 30584 GCACTCTCTCGCATTAACTTTAGCTTTATGCCTTGCTCTGCATCCATAACCGTCATTCCA 30643 || || || ||||| | || ||||| ||| || || ||||||||||||||||| || Sbjct 38680 GCGCTGTCACGCATAAGATTCAGCTTGCGGCCCTGTTCGGCATCCATAACCGTCATGCCC 38621 Query 30644 GATCTT-TCACAATCCCGGAGAAACCTGGCTTCTTCTTCCTTTCCTGC-GCTGGTCCGCC 30701 || || || ||| || ||| ||||| || || ||||| || |||| | || | Sbjct 38620 -ATGTTCTCGACATCTTTCAGGAACGCTGCTTCATCCTCTTTTCCGGCTGCTG-TGCGGC 38563 Query 30702 TGTTTACGTCTGGCCCCACAACAAAACGCTTATCGAACTCTTCCGGCTCCAGCAGCAGGC 30761 ||| | | ||| |||| | ||||||||||||||||||||||||||||||||||||| Sbjct 38562 GGTTGAACTGCGGCGCCACGATGAAACGCTTATCGAACTCTTCCGGCTCCAGCAGCAGGC 38503 Query 30762 AGTGCAGGGCAGTACCCATATCCAGCGCTTTCATCTTTTCAGTATCTACTGGCGCGCTTT 30821 |||||||||| || ||||||||||||||||||| |||||| || || || ||||| || Sbjct 38502 AGTGCAGGGCGGTGCCCATATCCAGCGCTTTCAGCTTTTCGGTGTCGACCGGCGCTGATT 38443 Query 30822 TTCGCCACTTATATACTGCCGGGTTTGTAGCTATATCATCGAGCTGGGACTTGCTTACAC 30881 | |||| | | |||||| | || | ||| ||||| ||||| || || | Sbjct 38442 TCTGCCATTGCAGCAGGGCCGGGCTCAACGCAACCATATCCAGCTGCGACTTACTCACGC 38383 Query 30882 CTGCCCCAGAATGATAATCCTCGTTAGAAATGTCGTAATAAATGCCAGGTTCCAT 30936 | | || || || ||||||||||| |||||| | ||||| || || | ||| Sbjct 38382 CGTCTCCGGAGTGGTAATCCTCGTTGCTGATGTCGAAGTAAATTCCTGGCTTCAT 38328 >seq6347 Length=2804 Score = 113 bits (124), Expect = 1e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 37597 CTGGCGAAAGAGTTACGCTGCCCGGTTATAGCATTGTCTCAGTTGAACCGTAATTTGGAG 37656 ||||| || || || ||||||||| | || |||| ||| | ||||| | | ||| Sbjct 107 CTGGCCAAGGAATTCAACTGCCCGGTGGTTGCCCTGTCGCAGCTCAACCGATCTCTTGAG 166 Query 37657 CAGCGTGCAAACAAGCGACCGTGCAATGCCGACTTACGTGAGTCGGGCGTAATCGAGCAG 37716 |||||| | ||||| || ||| ||| ||||||| || || || || | ||||||||| Sbjct 167 CAGCGTCCGAACAAACGCCCGATCAACTCCGACTTGCGGGAATCCGGAGCGATCGAGCAG 226 Query 37717 GAAGCTGATGTGATTTTCATGGTTTATCGCGACGAGAAGTACAACCCGCAGACAGAGATG 37776 || ||||| ||||| | | || || || |||||| ||| ||||| |||| ||| Sbjct 227 GATGCTGACGTGATCATGTTCGTATACCGGGACGAGGTGTATCACCCGGAGACCGAGCAT 286 Query 37777 AAAGGCGTCACTGAAATCAT 37796 |||||| || |||||||||| Sbjct 287 AAAGGCATCGCTGAAATCAT 306 >seq82 Length=30283 Score = 89.7 bits (98), Expect = 2e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 22444 GCCCACGGTGCGGCAGAAGAAATACCTCCAAACTCATCGCTAACTTGCAGTTTTTC-AAA 22502 ||||| || || || | |||||| ||||||||||| || || |||||| ||| Sbjct 27126 GCCCAGGGCGCTGCTAATGAAATATTCCCAAACTCATCA-TATCTCTGTGTTTTTGTAAA 27184 Query 22503 TGCATAGTATGCCGGATCGGAAAGGTCGAACATTACATTACCAGTGTAATCCTTTGGAAT 22562 |||| ||| || ||||| | || |||||||||| || || ||||||| ||| || || Sbjct 27185 GGCATTGTAAGCAGGATCTGTGAGATCGAACATTAATTTTCCTGTGTAATTCTTAGGTAT 27244 Query 22563 AATCCTCGCCACTTCACTAGAAAGAGCCTGCATTTCTCCCCTTTGAGTAATGATAAATCC 22622 | | | | ||| || ||||||||| ||||| | |||| ||| |||||||| Sbjct 27245 TTTATTAGTTATTTCTGCAGCAAGAGCCTGAATTTCAGAGCGCTGAGGAATAATAAATCC 27304 Query 22623 ACGGATGATATTATACTG 22640 | || ||||||||||| Sbjct 27305 ATTTATAATATTATACTG 27322 >seq11225 Length=5908 Score = 87.8 bits (96), Expect = 5e-13 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 37598 TGGCGAAAGAGTTACGCTGCCCGGTTATAGCATTGTCTCAGTTGAACCGTAATTTGGAGC 37657 |||| |||||||| ||||| || || || | || |||||| ||| | | |||| Sbjct 1515 TGGCCAAAGAGTTCAATTGCCCCGTCATCGCGCTATCGCAGTTGTCCCGCCAGTGTGAGC 1574 Query 37658 AGCGTGCAAACAAGCGACC-GTGCAATGCCGACTTACGTGAGTCGGGCGTAATCGAGCAG 37716 |||| | |||||||| || ||| || || ||||| || ||||| |||| ||||||||| Sbjct 1575 AGCGGCCCAACAAGCGCCCTGTG-AACGCAGACTTGCGGGAGTCCGGCGCGATCGAGCAG 1633 Query 37717 GAAGCTGATGTGATTTTCATGGTTTATCGCGACGAGAAGTACAACCCGCAGACAGAG 37773 || || || | || | | || ||||| |||||| ||||||||| | || ||| Sbjct 1634 GACGCGGACATCATCATGTTCGTCTATCGAGACGAGGTCTACAACCCGGACACTGAG 1690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151120528075134