Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_015296.1 Length=157061 Score E Sequences producing significant alignments: (Bits) Value seq501 118 1e-21 seq3869 93.3 4e-14 seq4256 89.7 5e-13 seq2048 87.8 2e-12 >seq501 Length=12468 Score = 118 bits (130), Expect = 1e-21 Identities = 74/80 (93%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 137231 GGCCCCGTAGCTCAGTGGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAAGT 137290 |||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 4781 GGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGT 4840 Query 137291 CCAGCCAGGGTCACCAAATA 137310 ||||| ||| ||||||||| Sbjct 4841 CCAGCAGGGGCCACCAAATA 4860 >seq3869 Length=8584 Score = 93.3 bits (102), Expect = 4e-14 Identities = 281/431 (65%), Gaps = 6/431 (1%) Strand=Plus/Plus Query 54187 TTCACCAGACGTTCGAACATGACGCGGTTGATCTGAATACCATAGTCGATACGGCGTTCA 54246 |||| |||||| | |||| | ||||||||| | || ||||| || | || | Sbjct 4336 TTCAGCAGACGGGTGTACATCAGCTTGTTGATCTGTACCCCGTAGTCCATGTGACGAACG 4395 Query 54247 CGGTTCTCTTCAAGACCACGGTTGTTCTTCAGGACCACAACATCATCAAATTGATAATGC 54306 ||||| | || |||||||||||| ||||| |||| | || | || |||| Sbjct 4396 CGGTTGGCGTCGGTACCACGGTTGTTTTTCAGCACCAGCAGGCTTTCCACTTCCAGATGC 4455 Query 54307 CAGATAGGGATATAGCAAGTTGCTGATCCGCCACGAATACCGCCTTGAGAGCAAGACTTT 54366 || || ||| || ||||| | ||||| || | ||||| || ||||| || || Sbjct 4456 CACATTGGGTAGAAGAGGGTTGCCGCGCCGCCGCGCACGCCGCCCTGCGAGCAGGATTTC 4515 Query 54367 AATGCCCCAGTCAGATATT--TTAT-GAAAGGAACCAGGCCTGTGTGCACCATTTCACCT 54423 | || | ||| | | | || | ||| |||| ||| ||||| | ||| || Sbjct 4516 A---CCGCGGTCTGGAAATGCTTGTAGAACGGAATGCAGCCGGTGTGGAAGGCTTCGCCG 4572 Query 54424 TTTCGGATAGGGCTACCGATGCCACGAATTGCTCCAACATCAAATCCGATCCCAGCGCGT 54483 ||||| ||||| || | | ||||| || | | | ||||| || ||||| Sbjct 4573 CCGCGGATCGGGCTGCCCAGCGCGCGAATGCGCCCGGCGTTGATGCCGATGCCGGCGCGC 4632 Query 54484 TTGGATACATAATCAACAATACTTTTGGCTGTAGCATTGATTGAGTCCAAAGTGTCACCG 54543 | ||| || || | ||||| ||| || || ||||| || |||| |||| ||| Sbjct 4633 TGGGAAACGTATTTCACAATCGCGCTGGAGGTGGCGTTGATGGAATCCAGGCTGTCGCCG 4692 Query 54544 GTTTTGATAAGAACACAAGAACTGAATTGGCGGGTTGGGGTACGAACGCCGGACATGATG 54603 | ||| || || || || ||||| || |||||||||||||| |||||||||||||| Sbjct 4693 CACTCGATCAGCACGCAGGAGCTGAACTGACGGGTTGGGGTACGCACGCCGGACATGATC 4752 Query 54604 GGTGTTGGAAG 54614 || || || || Sbjct 4753 GGCGTCGGCAG 4763 >seq4256 Length=25676 Score = 89.7 bits (98), Expect = 5e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 137631 TGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 137690 |||||||||||||||||||||| ||||||||||||| |||||| | ||||| ||||| | Sbjct 10069 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 10010 Query 137691 CATCGTCGCCAAATTGAAGTAG 137712 || | |||||||| ||| || Sbjct 10009 CAGAGGAGCCAAATTTAAGAAG 9988 Score = 89.7 bits (98), Expect = 5e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 137631 TGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 137690 |||||||||||||||||||||| ||||||||||||| |||||| | ||||| ||||| | Sbjct 11837 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 11896 Query 137691 CATCGTCGCCAAATTGAAGTAG 137712 || | |||||||| ||| || Sbjct 11897 CAGAGGAGCCAAATTTAAGAAG 11918 >seq2048 Length=13079 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 137631 TGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 137690 |||||||||||||||||||||| ||||||||||||| |||||| | ||||| ||||| | Sbjct 4083 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 4024 Query 137691 CATCGTCGCCAAATTGAA 137708 || | |||||||| || Sbjct 4023 CAGAGGAGCCAAATTTAA 4006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 502289910729320