Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1351 123 2e-23 seq3382 113 3e-20 seq8653 111 1e-19 seq4240 109 4e-19 seq3381 107 1e-18 seq13839 82.4 5e-11 >seq1351 Length=12664 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 ||||| |||||||||| ||| || || |||||||||||||| ||| | || || Sbjct 5146 CTCAATACCAAGTGAAGGGTGGACTCCTTTTGAATGTTATAGTCGCCAAGAGTGCGACCA 5087 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || || ||||| || |||||||| || || || |||||||| | || | ||||||||| Sbjct 5086 TCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTG 5027 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || |||||| |||||| | || | ||| | ||||||| || | || ||| Sbjct 5026 TCTTGAATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCCTCAACCTCAAGTGTGATG 4967 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || ||||| ||||| || |||||||||||| Sbjct 4966 GTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATA 4931 Score = 113 bits (124), Expect = 3e-20 Identities = 154/216 (71%), Gaps = 10/216 (5%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| ||| || || |||||||| ||||| ||| | ||| |||| || Sbjct 4685 AACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCGAGGGTGCGTCCATCCTC 4626 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || || |||||||| || | ||||||||||| | || | ||||||||||| Sbjct 4625 AAGTTGCTTGCCGGCAAAGATCAAACGTTGCTGGTCGGGTGGGATACCCTCCTTGTCCTG 4566 Query 34892 AATCTTCTGTTTGACG-----GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 ||||| |||||| |||| | ||| || |||| || |||| ||| ||| Sbjct 4565 GATCTTGNNCTTGACGTTCTCGATGGTGTCGGATC-----CCTCGACCTCGAGGGTGATG 4511 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || ||||| ||||| || |||||||||||| Sbjct 4510 GTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATA 4475 Score = 113 bits (124), Expect = 3e-20 Identities = 154/215 (72%), Gaps = 10/215 (5%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || || |||||||| ||||| ||| | ||| |||| || Sbjct 4912 ACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCGAGGGTGCGTCCATCCTCA 4853 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || || |||||||| | || | ||||||||||| Sbjct 4852 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGAATACCCTCCTTGTCTTGG 4793 Query 34893 ATCTTCTGTTTGACG-----GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| |||||| |||| | ||| || |||| || || | || |||| Sbjct 4792 ATCTTGGCCTTGACGTTCTCGATGGTGTCGGATC-----CCTCGACCTCCAGAGTGATGG 4738 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | ||||| || ||||||||||||||||| |||||| Sbjct 4737 TCTTTCCAGTTAGAGTCTTCACAAAGATTTGCATA 4703 >seq3382 Length=4522 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||| || ||| | || |||| |||| ||| ||||||||||| Sbjct 4371 TCCTTCTGGATATTGTAGTCAGAGAGGGTACGACCATCCTCCAACTGCTTTCCGGCAAAG 4312 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||||||||| | || | ||||||||||| ||||| |||||| | Sbjct 4311 ATGAGACGTTGCTGGTCGGGTGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTT 4252 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || |||| || |||| ||| ||||| || || ||||| ||||| || Sbjct 4251 TCAATGGTGTCGGATCCCTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACG 4192 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 4191 AAGATCTGCATA 4180 Score = 107 bits (118), Expect = 1e-18 Identities = 152/214 (71%), Gaps = 10/214 (5%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || || || ||||| ||||| || ||| | || | || ||| Sbjct 4161 ACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGACCGTCCTCC 4102 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| ||||||||||| || || || |||||||| | || | ||||||||||| Sbjct 4101 AACTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTGTCTTGG 4042 Query 34893 ATCTTCTGTTTGACG-----GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| |||||| |||| ||||| | ||||||| || | ||| |||| Sbjct 4041 ATCTTGGCCTTGACGTTCTCGATGGTATCGGAAC-----CCTCAACCTCAAGGGTGATGG 3987 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| || |||||||| || || || ||||| Sbjct 3986 TCTTTCCGGTCAGAGTCTTGACGAAAATTTGCAT 3953 >seq8653 Length=1535 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| ||| | || |||| || ||||| || |||||||| Sbjct 2 TCCTTCTGAATGTTGTAGTCACCGAGGGTACGACCATCCTCGAGCTGCTTGCCGGCAAAG 61 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | |||||||| || ||||| |||||| Sbjct 62 ATGAGACGCTGCTGATCGGGTGGGATTCCCTCCTTATCTTGGATCTTGGCCTTGACGTTC 121 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | ||||||| |||| ||| || || || || ||||||||||||||| Sbjct 122 TCGATAGTGTCAGAGCCCTCAACCTCGAGGGTGATAGTCTTGCCAGTGAGAGTCTTCACA 181 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 182 AAGATCTGCAT 192 >seq4240 Length=2116 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || |||||||| || ||||| || || | || | || || Sbjct 1651 ACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCAGAGAGAGTGCGACCGTCCTCG 1592 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||||||||| || || || |||||||| | || | ||||||||||| Sbjct 1591 AGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTGTCCTGG 1532 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | ||| | | || || || | ||| ||||| ||| Sbjct 1531 ATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCTTCGACCTCAAGGGTGATGGTCTTT 1472 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | |||||| || |||||||||||| Sbjct 1471 CCAGTCAAAGTCTTGACGAAGATCTGCATA 1442 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||| || ||| | || |||| |||| ||| ||||||||||| Sbjct 1405 TCCTTCTGGATATTGTAGTCAGAGAGGGTACGACCATCCTCCAACTGCTTTCCGGCAAAG 1346 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||||||||| | || | ||||||||||| ||||| |||||| Sbjct 1345 ATGAGACGTTGCTGGTCGGGTGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTC 1286 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | |||| || || | ||| || || || || ||||| || || || Sbjct 1285 TCGATGGTGTCCGAGCCCTCGACCTCAAGGGTAATAGTCTTACCAGTGAGTGTTTTTACG 1226 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 1225 AAAATCTGCAT 1215 >seq3381 Length=12314 Score = 107 bits (118), Expect = 1e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| |||||||| ||||| ||||| ||| | || |||| ||| Sbjct 1167 ACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCACCGAGGGTACGACCATCTTCC 1108 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | || ||||| ||||| || || || |||||||| | || | || |||||||| | Sbjct 1107 AATTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCGGGTGGAATACCTTCCTTGTCTTGA 1048 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | || | ||||||| || | || || || | Sbjct 1047 ATCTTAGCCTTGAC--ATTCTCAATGGTGTCCGAGCCCTCAACCTCAAGAGTGATCGTCT 990 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || ||||||||||| ||||||||||||||| Sbjct 989 TGCCAGTGAGAGTCTTGACAAAGATCTGCATA 958 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/215 (71%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | || ||| || |||||||| ||||| ||| | || |||| || Sbjct 1396 AACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGCCAAGAGTACGACCATCCTC 1337 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || || |||||||| || || |||||||| || | || | |||||||| || Sbjct 1336 GAGTTGCTTGCCGGCAAAGATGAGACGTTGCTGATCGGGTGGGATACCCTCCTTATCTTG 1277 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT--TCACCGG--CCTCAACATCGACGGTTATGG 34947 ||||| |||||| | ||||| | ||| ||||||| |||| ||| || | Sbjct 1276 GATCTTGGCCTTGACGT----TCTCGATAGTATCCGAACCCTCAACCTCGAGGGTGATAG 1221 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | ||||| || | ||||||||||||||| |||||| Sbjct 1220 TCTTTCCGGTCAAAGTCTTCACAAAGATTTGCATA 1186 >seq13839 Length=228 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || || |||||||| ||||| ||| | ||| |||| || Sbjct 138 ACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCGAGGGTGCGTCCATCCTCA 79 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || || |||||||| | || | ||||||||||| | Sbjct 78 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTGTCTTGA 19 Query 34893 ATCTT 34897 ||||| Sbjct 18 ATCTT 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324521920664856