Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq19 226 3e-54 seq3128 93.3 5e-14 >seq19 Length=770976 Score = 226 bits (250), Expect = 3e-54 Identities = 654/992 (66%), Gaps = 22/992 (2%) Strand=Plus/Minus Query 18584 TATATTTTAGTTGATTGTTATGTTATGGTTAAAAATCAACATCCAAAGAAAAAG---AA- 18639 |||| |||||| | || || | | | |||||||||| |||||| || || | || Sbjct 360942 TATACTTTAGT-GTTTCTTTGGCTGGGCTTAAAAATCATCATCCAGGGAGAAGGCCGAAG 360884 Query 18640 --TTCTCTTCATTAGAATTCATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAA 18697 || ||||| |||| ||| || || |||||||||| || | || | ||| |||| Sbjct 360883 CTTTATCTTCCGTAGAGGTCAACACCCCGCTTTTTTGATAATCACCCACACGTTTCTCAA 360824 Query 18698 AGAAATTAGTTTTTCCCTCTAATGATATACAT-TCCATAAAATCAAATGGATTTTTTACA 18756 ||||||| ||||| || | | || || ||| |||||||||||||| ||||| | || Sbjct 360823 AGAAATTGGTTTTGCCTTGCAGGGAGAT-CATCTCCATAAAATCAAACGGATTGGTGGCA 360765 Query 18757 TTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATA- 18815 | ||||||||| | | || | ||| || ||| || || ||||| | |||||| Sbjct 360764 TGATATATTTTGGTATAACCCAGTTCCTGCAGCCATCTGTCTGCAACAAACTCAATATAC 360705 Query 18816 TGTGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAA 18875 |||| ||||| | |||||| || || | ||| || | |||||||||| ||| Sbjct 360704 TGTG-ACATCAGTTTTGCATTCATCCCGATCAGGGCAACCGGCAAGGCATCTGTAATAAA 360646 Query 18876 TTCTTGTTCTATATTTACTGCCTCTGATATAA-TAGATACAACTCTATCTTCATTAGGAG 18934 ||| | ||| || | ||| || || |||| | || | || || | || Sbjct 360645 TTCCTTTTCGATTTCTACCGCGTCGCGGATAATTCCATGAACGACTTCCTGGCTCAGTTT 360586 Query 18935 GGTATAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTAC 18994 | | || || |||| | | || || ||||| |||||||| | ||||| ||||| Sbjct 360585 ATTTTTGAGCAT-TTTATAAAGCAGGCAGGCAAATTCACAATGCATCCCCTCATCTCTGG 360527 Query 18995 TTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATA 19054 ||||| |||||| ||| |||| || |||||||| ||||||||||| |||||||| | Sbjct 360526 AAATCAACTCATTACTAAAGGTTAGCCCTGGCATCAGGCCTCTTTTTTTCAACCAGAAGA 360467 Query 19055 TAGAAGCAAATGATCCAG-AAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTT 19113 | ||| || | | ||| | ||||| || ||||| ||||| || ||||| || | | | Sbjct 360466 TCGAA-CAGAAGCTCCCGCTGAAGAAAATGCCTTCCACTGCGGCGAAAGCCACCAAACGT 360408 Query 19114 TCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTT 19173 || || || | | | | |||||| || |||||| || || || || ||| Sbjct 360407 TCGGCAAAATTTCCGCC------CTCAATCCAGCGCAATGCCCATTCTGCTTTTTTCTTT 360354 Query 19174 ACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACA 19233 ||||| || | ||||||| | || || || || || | |||||||| | Sbjct 360353 ACACAAGGAACCGTCTCTACGGCATGGAACAGCCTGTCTTTTTCTTCAGGATCTTTAATA 360294 Query 19234 TATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAAT 19293 || | ||| |||| | || |||| || || || ||||| || ||||| || Sbjct 360293 TAGGTATCGATCAGCAGCGCATAGGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAG 360234 Query 19294 CCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTT 19353 || |||||||| | ||||| | | ||||||||| || || | | | | ||| Sbjct 360233 CCATAAAAACAACGGGCTTCGGGAAGCTGTACTTCGCTCATGAAGTTCACTGCAAGGTTT 360174 Query 19354 TCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTT 19413 ||||| || || || ||||| || |||||||| || | || ||| ||| ||||| Sbjct 360173 TCATTTACAATGCCGTCACTTGCAGCAAAAAAAGCAAGTATATGAGAAATGAAATGACGC 360114 Query 19414 TCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACT 19473 || ||| |||| | | ||| | || || | ||| | || | ||||||| | Sbjct 360113 TCGCCTGTATTTAAGTTGTCCCAGTGCTTCTGGTCATCAGAAAGGTCAATTTCTTCAGCG 360054 Query 19474 GTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGA 19533 ||||| ||| || || || |||||||| | ||| || ||| | |||| ||||| Sbjct 360053 GTCCAGAAACTTGCTTCACTCTTCTTATACATTTCCCAGATTTCAGGGTATTTAATAGGC 359994 Query 19534 AATATAACAAATCTATTTTTATTTTCT-TTAA 19564 || | |||||| | | || |||||| |||| Sbjct 359993 AAAAGAACAAAGCGGTCCTTGTTTTCTCTTAA 359962 Score = 215 bits (238), Expect = 6e-51 Identities = 627/953 (66%), Gaps = 24/953 (3%) Strand=Plus/Minus Query 47886 GATGCTAGATTACATACAGCTACCTCAT--TTGGATTAGTATATTGTATTATTTCAGCAC 47943 || || || ||||||||||| ||||| | ||||| |||||| | ||| ||||| | || Sbjct 362367 GAGGCCAGGTTACATACAGCAACCTCGTCTTTGGA--AGTATACTCTATAATTTCTGTAC 362310 Query 47944 ATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTGTTACATGC 48001 | || || || |||||| || || |||||||| || || ||| |||| ||| Sbjct 362309 AAAGGTTGGAACTTTTGATGGTTCCTAAATTTTGCTGGTTGGATTTGC--TGTTTGCTGC 362252 Query 48002 GTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCA 48061 || || || | || | |||| ||||| ||||| ||||| || || | || | ||| Sbjct 362251 ATCTTTATACAACAGATAAGGGGTTCCGGTTTCAATCTGTGAATCCAGAATGGCAAACCA 362192 Query 48062 AACAGTCCTAGCCTTTATAACAGCTCTA---GCTTTATTATCATGTTCGTATTTAGTATA 48118 || || | ||||| | | | || || || | |||||| ||| Sbjct 362191 AAGC-TCTTGTGCTTTA--ATGGTTTTACGGGCACGTCCTTCTTTTTCGTAACGCTCATA 362135 Query 48119 TAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACAT 48178 ||| || ||||| | ||| | || | | || || ||||| |||||| | Sbjct 362134 TAAAGCATCGAATTCTGCACCAAAGCAATCTGCCAGTCCCGGGGCTTCATGAGGACAGAA 362075 Query 48179 CAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGC 48238 || ||| || | | | || ||| || |||| || | || || |||||| || Sbjct 362074 TAAACTCCAGTCTCCGTTTTCTTCTACCCTTCTCATGAACAGGTCACATACCCAAAGGGC 362015 Query 48239 TATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTA---AGTTCAA 48294 ||| |||||||| || | | |||||||| || ||| || |||| || || | Sbjct 362014 -ATAGAATAAATCTCTGGCACGAAGTTCTTCTTTACCATGGTT---TTTACGCAGGTCCA 361959 Query 48295 GAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTT 48354 |||| || | ||| ||||||||||| || | || || || | ||||| |||| Sbjct 361958 GAAAACTCAGCACATCTGCATGCCATGGCTCCAGGTAAATGGCAAAAGCACCTTTACGTT 361899 Query 48355 TATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAA 48414 || || || || || | ||| | ||| |||| |||| | ||| | ||||| || |||| Sbjct 361898 TACCTCCACCCTGGTCCACATAACGGGCGGTATCGTTAAATACTTTCAACATAGGTACAA 361839 Query 48415 TACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAA 48474 | ||||| | || || ||||| ||||||| ||| | || | || ||| | Sbjct 361838 TCCCATTGCTGGTCCCGTTTGTTCCACCAATATAAGATCCCGTGGCACGGATGTTATGGA 361779 Query 48475 TTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCAT 48534 | | ||| ||||||||||| ||| || ||| ||| |||| | ||||| | Sbjct 361778 TGCTTAAACCAATACCACCTGCGCTTTGTGAAATTTTAGCGGTTTGTTTTAAAGTATCGT 361719 Query 48535 AAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGAT 48594 |||||||||| ||||| || || ||| | | || ||| || ||||||||| || | Sbjct 361718 AAATTCCTTCAATACTGTCGTCCTGCATGGTCAGTAAAAAGCAGGAAGACATTTGAGGTT 361659 Query 48595 GACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACA 48654 | || ||| ||||||||| ||||| | |||||| ||||||| ||| | || Sbjct 361658 TAGGGGTAGCTGCATTAAATAAAGTTGGGGTTGCATGCGTAAACCAGCGCTCACTCATCA 361599 Query 48655 ATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCA 48714 ||||| ||| |||| || || ||||| || || || |||| | ||||||| Sbjct 361598 GGTTATACGTTGCAATCGCACTTTCAATATCTTCTTTGTGAATCCCTACGGCAACACGCA 361539 Query 48715 TTAACATATATTGAGGTCTTTCAACAATTTTGTTATT-TATTTTCAAAAGATATGATTTT 48773 | |||| || ||| || | ||| |||| ||||| || |||||||| ||||| |||||| Sbjct 361538 TAAACAAATGTTGCGGGCGTTCTACAA-TTTGTCCTTCTATTTTCAGCAGATAGGATTTT 361480 Query 48774 TCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826 || | |||||||| |||||||| | | || ||| || | |||| |||||| Sbjct 361479 TCAAGGGTTTTAAACCCAAAATAATCGAATCCAAAATCCCTGTCATAAATAAT 361427 >seq3128 Length=12816 Score = 93.3 bits (102), Expect = 5e-14 Identities = 168/243 (69%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 65903 GTGAAAATATGGCAAATAAAGGAAAAATAGTGATAGTTGCAGCATTGGATGGAACATTTA 65962 ||||| | ||||||| ||||| || | ||||||||| |||||||| ||||||||||| Sbjct 1842 GTGAAGAGTTGGCAAACAAAGGCAAGACAGTGATAGTAGCAGCATTAGATGGAACATTCC 1901 Query 65963 AAAGAAAACCTTTTGGTAATGTATTAAATTTAATTCCATTATCTGAAACAGTAACAAAAC 66022 || ||||||| ||||||| || || | | | ||| || || ||||| || || Sbjct 1902 AACGAAAACCGTTTGGTACAGTGTTGGACCTGGTACCAAAGTCAGAGACAGTGACCAAGT 1961 Query 66023 TTACAGCTGTGTGTATGAAATGTTTTAAAGATGCATCTTTTTCAAAACGTATAGGTACAG 66082 | | || ||||| ||| || || ||||| || | || || ||||| || | | || Sbjct 1962 TATCGGCAGTGTGCATGGTGTGCTTCAAAGACGCGCCATTCTCCAAACGAATCGTTCAAG 2021 Query 66083 A-AACAGAGATAGAAATTATAGGCGGTAAAGATAAATATCTATCTGTATGTAGGAAGTGT 66141 | | |||| | || | || || ||| || || || | ||||| ||||| | ||| Sbjct 2022 ACGAGAGAG-TGGAGCTAATTGGTGGTTCTGACAAGTACATCTCTGTTTGTAGAGAATGT 2080 Query 66142 TAT 66144 ||| Sbjct 2081 TAT 2083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561910466936280