Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2036 152 4e-31 seq19 107 2e-17 seq3381 89.7 4e-12 >seq2036 Length=5547 Score = 152 bits (168), Expect = 4e-31 Identities = 374/560 (67%), Gaps = 34/560 (6%) Strand=Plus/Minus Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGT 550053 |||||| || |||||||| || ||||| ||||| || ||||||||||||| | || Sbjct 718 TATAGGAATCGATTTAGGTACAACATACTCGTGTGTCGGAGTTTGGCAAAATGATCGTGT 659 Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113 || || |||||||| ||||| |||||||||||||||||||| || || | ||||| || Sbjct 658 CGAGATCATTGCCAACGATCAGGGTAACAGAACTACTCCATCGTACGTCGCCTTCACAGA 599 Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTACCAA 550170 ||||| | | | |||| ||||| || || | || |||| || || || ||||| Sbjct 598 CACTGAGCGTCTCATTGGAGATGCCGCCAAGAACCAGGTTGCCA-TG--AACCCAACCAA 542 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 ||| | ||||| || || ||||| ||||| | | || | ||| || || ||| | Sbjct 541 CACTGTCTTTGACGCCAAGCGTTTGATTGGTCGCAAGTTCAGTGACTCTGTCGTGCAGTC 482 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGC 550290 ||||||||||| ||||| ||| | | | || | |||| || |||| Sbjct 481 GGATATGAAGCACTGGCCATTCAA----GGTCATCTCCAAGGAAGAC---------AAGC 435 Query 550291 TACTCAT-GAAG----GATC---TGTTAAACAA-----TTTTCACCAGAACAAATTTCAT 550337 |||||| ||| | || || | || | || || ||||| |||| || Sbjct 434 CACTCATCCAAGTCGAGTTCAAGGGTGAGACCAAGACCTTCTCCCCAGAGGAAATCTCTG 375 Query 550338 CTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACG 550396 | ||||| | | || ||||| | || ||| || | | || |||||| || Sbjct 374 CCATGGTGCTCCTCAAGATGAAGGAGACTGCCGAAGCCTACCTCGG-CAAGAACGTCGAC 316 Query 550397 GATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGAT 550456 | || || || ||||| ||||| || || || ||||| || |||||||| || || ||| Sbjct 315 AACGCCGTCATCACTGTCCCAGCCTACTTCAACGACTCCCAGCGTCAAGCCACCAAGGAT 256 Query 550457 GCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA 550516 || || ||||| || || || | ||||| ||||| || || ||||| || || Sbjct 255 GCCGGTGTCATTGCCAAGCTCAACGTCCAGCGTATCATCAACGAGCCAACTGCCGCCGCC 196 Query 550517 CTTGCATATGGACTTGATAA 550536 |||| || || || || || Sbjct 195 ATTGCCTACGGTCTCGAGAA 176 >seq19 Length=770976 Score = 107 bits (118), Expect = 2e-17 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 550314 AATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTG 550373 ||| | | ||| || | ||||| | ||| || | |||||||||| |||| ||| | Sbjct 316269 AATATACTCCACAAGAGATTTCTGCAATGATTCTGCAGAAAATGAAAAAAACTGCCGAAG 316328 Query 550374 CTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACT 550433 ||| | ||||| ||||| || || || || || || || || || ||||| |||||| Sbjct 316329 ACTTTTTAGGTCAGGAAGTAACTGAAGCTGTGATCACAGTTCCTGCTTATTTCAATGACG 316388 Query 550434 CACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTA 550493 |||||||||| ||||| ||||| ||||| ||||| || | | ||| | || | Sbjct 316389 CACAACGTCAGGCTACAAAAGAGGCTGGTGAGATTGCAGGTTTAACTGTAAAAAGGATCA 316448 Query 550494 TCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537 | || ||||||||||| || || | || ||||| | |||||| Sbjct 316449 TTAACGAACCTACTGCAGCGGCTTTAGCCTATGGTTTGGATAAA 316492 Score = 104 bits (114), Expect = 2e-16 Identities = 262/395 (66%), Gaps = 24/395 (6%) Strand=Plus/Plus Query 552202 AAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTT 552261 || |||| || || ||||||| |||||| |||||| |||||||| | | | | | Sbjct 317019 AAGGTGTAAACCCTGATGAGGTTGTTGCAATTGGTGCTGCAATTCAGGGTGGTGTATT-- 317076 Query 552262 CTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTC 552321 |||| | |||| || || | || || | | |||||||| || || || Sbjct 317077 ---GACA----GGTGAAG---TAAAAGACGTTTTATTATTGGATGTTACCCCGCTTTCAT 317126 Query 552322 TTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTC 552381 | ||| | || || | || ||| | ||||| || || || || ||||| ||||||| Sbjct 317127 TAGGTATTGAGACCATGGGTGGTGTGATGACAAAACTGATTGAAGCCAATACAACTATTC 317186 Query 552382 CTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTC 552441 ||| ||||||| | || ||||| | | || ||||| || | || ||| | Sbjct 317187 CTTCTAAAAAAGCAGAAACTTTCTCTACTGCTGCTGACAATCAGCCTTCAGTAGAAATCC 317246 Query 552442 AAATTTTTGAAGGAGAAAGAAAATTCACTAA---AGATAATAATCA-ACT--TGGTACTT 552495 | ||||| | |||||| | | ||| || | | || | ||| ||| || Sbjct 317247 ATATTTTACAGGGAGAACG------CCCTATGGCAGCTCAAAACCGTACTATTGGACGTT 317300 Query 552496 TTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCG 552555 ||| |||||| |||||||| || || |||||||| || || |||||||||||| | || | Sbjct 317301 TTATTTTAGATGGTATTCCACCAGCACCTCGTGGTGTTCCTCAAATTGAAGTTGCATTTG 317360 Query 552556 ATATCGATGCCAATGGAATTTTGAATGTGACTGCT 552590 |||| |||||||| || || || |||| | |||| Sbjct 317361 ATATTGATGCCAACGGTATCCTGCATGTAAGTGCT 317395 >seq3381 Length=12314 Score = 89.7 bits (98), Expect = 4e-12 Identities = 154/222 (69%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||| | ||| || | || || ||| ||| ||||| || ||||| || | ||||| Sbjct 1633 GAGTCTGAGAACCAAGTGGAGAGTAGATTCCTTTTGG--ATGTTGTAGTCGCCAAGAGTG 1576 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||| || || || || || ||||| || | | ||||| || || || || || Sbjct 1575 CGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCGGGTGGGATACCC 1516 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGA 563433 || |||||||| || ||| ||||| |||||| ||||||| | | |||||| Sbjct 1515 TCCTTATCTTGGATCTTTGCCTTTACGTTCTCAATGGTATCAGAGCCTTCAACCTCGAGA 1456 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || | ||| |||||||||||||| || ||||| || |||||| Sbjct 1455 GTGATAGTCTTACCAGTAAGAGTCTTGACGAAGATCTGCATA 1414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027803228936230