Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_016158.1 Length=49576 Score E Sequences producing significant alignments: (Bits) Value seq373 309 1e-79 seq40 201 4e-47 seq501 141 3e-29 seq4 113 1e-20 seq278 95.1 4e-15 >seq373 Length=63667 Score = 309 bits (342), Expect = 1e-79 Identities = 372/504 (74%), Gaps = 4/504 (1%) Strand=Plus/Plus Query 46555 CGCCATCGCTGGCGCTTTCGGCCTGGGCCATATTCGCGGCTCAAGCAAAGCAGAAGCAAA 46614 ||| ||||||||||| ||| || | |||||| |||||| | || || |||||||| || Sbjct 9446 CGCTATCGCTGGCGCGTTCTGCATCGGCCATGCTCGCGGAACCAGTAAGGCAGAAGCCAA 9505 Query 46615 AGCAGTTCAGCAGCGCACCGAAGATAACGCAGCTGCAACGGTCGCAGCAGCAGATCGCCG 46674 ||| | ||||||||| |||||||| |||||||| |||| |||||||| ||||| || Sbjct 9506 AGCTGATCAGCAGCGTACCGAAGAAAACGCAGCCGCAAACGTCGCAGCGGCAGAACGTAA 9565 Query 46675 TGTAGAGACAACGAAAGAGGCCAGCAATGTACAGCAAACTGTTAACCATATGTCTGGCGA 46734 | || | |||||||||||||| ||| | | | | ||||| | |||| || || Sbjct 9566 GGCGGAAGCTACGAAAGAGGCCAGTAATCTTGAAGAGAGCGTTAAGCGTATGGCTAATGA 9625 Query 46735 TGATGTTGATCGCGAGCTGCGCGAAAACTTCACCCGCCCCGGTGGTGATTGATACGGGCT 46794 ||||||||||| |||||||| | ||||||||||||||||| || ||||||| | || Sbjct 9626 CGATGTTGATCGGGAGCTGCGTAAGTACTTCACCCGCCCCGGTAGTCGTTGATACAGCCT 9685 Query 46795 GCCTGTGGACCCGGATTATCTATCTGACAAACCACGATATCGACGTTATGGACCGCCAGA 46854 || ||| || |||||||| ||||| | || |||||||| || |||| |||| Sbjct 9686 GCTACTGGGTTCGCATTATCTACCTGACCGATCATGATATCGATGTGCTGGATAAGCAGA 9745 Query 46855 CGAAGAAAGACATCCTGGCGCATAACAAAGCGTGGCAGGCGAACTGTCAGAAACCAACAG 46914 | ||| ||||| ||| |||| |||||| | |||||| ||||||| | | ||||| Sbjct 9746 CAAAGCGCGACATTCTGACGCACAACAAATCAGCGCAGGCTAACTGTCCGCATTTAACAG 9805 Query 46915 AGaa---aaaaaTATGAGCGAAGCTAAACCGCAGGACGGCACTACCGTTAAAGGCTATCG 46971 | || | || ||||||||||||||||||| ||||| ||| | || || ||||| Sbjct 9806 AAAAGGGTTCGAAATTAGCGAAGCTAAACCGCAGGTCGGCAACACCATAAAGGGATATCG 9865 Query 46972 AACCTTATCGCCTGGTGATATTGAGCGTATGAATCGCCTGAAGGGTGTCAGCCGACACTT 47031 || ||| | || || || ||||| || ||||||||||| |||| |||||||| || || Sbjct 9866 CACTTTAACTCCCGGCGACATTGACCGGATGAATCGCCTTAAGGACGTCAGCCGTCATTT 9925 Query 47032 CTGTAATTTACATGAT-ACAGAAC 47054 || | | | | ||| ||||||| Sbjct 9926 TTGCAGTCTGCTGGATAACAGAAC 9949 >seq40 Length=14228 Score = 201 bits (222), Expect = 4e-47 Identities = 262/362 (72%), Gaps = 3/362 (1%) Strand=Plus/Plus Query 39215 AACACCGACTGGGCTTATGGGGTGATTCGATGAAATCTCTTGCAGAGCAGATGCGTAACC 39274 ||||| |||||| ||| |||||| | |||||| | || | |||||| |||| Sbjct 11031 AACACTGACTGGATTTACGGGGTGGATTTATGAAAAACATCGCCGCACAGATGGTTAACT 11090 Query 39275 ACGACCGCGAGCAGATGAGCCGCATGGCCCATAACCTGCCAGAGCAGTACCAGGAGCGTG 39334 ||||| ||||||||| | || || ||| | ||| |||| || |||||| | || Sbjct 11091 TTGACCGTGAGCAGATGCGTCGGATCGCCAACAACATGCCGGAACAGTACGACGAAAAGC 11150 Query 39335 CGCCGGTCGAACAAGTGGCGCAGGTATTCAACAAGCTGTTCAACGAGCTGCGCGCCGCTT 39394 ||| ||| |||| || |||||| | ||||| |||||| | || | | || ||| Sbjct 11151 CGCAGGTACAACAGGTAGCGCAGATCATCAACGGTGTGTTCAGCCAGTTACTGGCAACTT 11210 Query 39395 TCCCGGCCAGTATGGCAAACTTCCGCACCCAGGATGACCTGAACGAATTCCGCCGTCAGT 39454 ||||||| || |||| ||| || |||| |||| ||||||||| ||||||| |||| Sbjct 11211 TCCCGGCGAGCCTGGCTAAC---CGTGACCAGAATGAACTGAACGAAATCCGCCGCCAGT 11267 Query 39455 GGCTGCTGGCGTTTCAGGAGAACGGGATCCACACCATGGCTCAGGTCGATGCCGGCATGC 39514 || | ||||| || | ||| ||||||||| ||| |||| ||||| | || || |||| Sbjct 11268 GGGTTCTGGCTTTCCGGGAAAACGGGATCACCACAATGGAACAGGTTAACGCAGGAATGC 11327 Query 39515 GTGTAGCTCGCCGCCAGGAGCGTCCATTCCTGCCGTCTCCGGGCCAGTTCGTCGCCTGGT 39574 | ||||| || || ||| | || ||||||||||| || || || ||||| |||||||||| Sbjct 11328 GCGTAGCCCGTCGGCAGAATCGACCATTCCTGCCATCACCCGGGCAGTTTGTCGCCTGGT 11387 Query 39575 GC 39576 || Sbjct 11388 GC 11389 Score = 147 bits (162), Expect = 7e-31 Identities = 148/188 (79%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 42240 TTTGATTTTCTGGAATCAAACCGCCATAATCATGTCATCGGAGCCTGAACAACTCCGGTG 42299 |||||||||| |||||| | |||||| | |||| ||||| ||||| |||||||| Sbjct 13872 TTTGATTTTCAATAATCAACTTGTCATAATTAAGTCACCGGAGTTTGAACTCCTCCGGTG 13931 Query 42300 ACTTCTGCGCATTTAAGGGGACTTAAATGCGACCA--CAATCTGAACTCC--TCACCTTG 42355 |||||||||| | | |||||| | ||||| || ||||| ||||| || || | Sbjct 13932 ACTTCTGCGC-TAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCT- 13989 Query 42356 TCACAGATGCAGAAATGCACCTGCGATTTTCTGCATTCTGCGTTTGACCTCTTCGGAGGT 42415 ||||||||||||||||||||||||||| | ||||| | |||||||| |||| ||||||| Sbjct 13990 TCACAGATGCAGAAATGCACCTGCGATATCTTGCATCCAGCGTTTGATCTCTGCGGAGGT 14049 Query 42416 GAAGCGTG 42423 |||||||| Sbjct 14050 GAAGCGTG 14057 >seq501 Length=12468 Score = 141 bits (156), Expect = 3e-29 Identities = 164/214 (77%), Gaps = 19/214 (9%) Strand=Plus/Minus Query 25962 CTTCTAAGCCGTAGGTCGTAGGTTCGAATCCTACAGGGCGTGCCATTTAAAAA-CAGTCG 26020 ||||||||||||||||| ||||||||||||| |||||||||||||||| || || || Sbjct 11078 CTTCTAAGCCGTAGGTCACAGGTTCGAATCCTGTAGGGCGTGCCATTTAATAATCAATCA 11019 Query 26021 CTTACGCCAGTTTCAAGCCAGCC--TGATTTTCTCCTTGTGT--CGTATTTGTGTCATGG 26076 |||| || ||| |||| | ||||||| |||||||| | |||||| | ||| Sbjct 11018 CTTAT--CAACTTCCT-CCAGTCGCTGATTTT-TCCTTGTGGGACATATTTGGGACATCT 10963 Query 26077 T-TGCCAAAAATGGCA---------TCAATTTTCCGTGCGTGTTCGCTTAAGTGGTTCGG 26126 | ||| |||| | ||| ||||||| |||||||| || |||| ||||| || Sbjct 10962 TCTGCAAAAATTTGCAAAAATTGAGTCAATTTGACGTGCGTGCTCAGTTAAATGGTTAGG 10903 Query 26127 TGCCAGGTGAGCGTATCGACGTACCATTTCGATG 26160 |||||||||||| |||||||| |||||||||||| Sbjct 10902 TGCCAGGTGAGCATATCGACGGACCATTTCGATG 10869 >seq4 Length=38681 Score = 113 bits (124), Expect = 1e-20 Identities = 179/256 (70%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 46196 AAAAGAACCTGGGCAACCAGGTTGCTGGTGATGGCTGGAAATATCGCGGTCGCGGCCTGA 46255 ||||||| |||| ||| | | | | ||| |||||| || | ||| ||||| || | Sbjct 5236 AAAAGAA--TGGGGAACAACGGTCCGACTGACGGCTGGTTTTACCTCGGGCGCGGGCTTA 5179 Query 46256 AGCAAATCACCGGGCTCAGCAATTACCGCAACTGTGGCCACGCGCTGAAGTTGGACCTTG 46315 || ||||||||||| | ||| || ||| |||| ||| | | |||||| |||| || | Sbjct 5178 TCCAGATCACCGGGCTGAACAACTATCGCGACTGCGGCAATGGCCTGAAGGTGGATCTGG 5119 Query 46316 TAACCCAGCCTGAATTGCTGGAACAGGATGAATATGCTGCGCGCTCCGCTGCATGGTTCT 46375 | | |||||||| |||||| ||||| ||||| || || ||| ||| || ||||||| Sbjct 5118 TTAAGCAGCCTGAGCTGCTGGCGCAGGACGAATACGCGGCCCGCAGCGCGGCGTGGTTCT 5059 Query 46376 ATGTCTCGCACGGATGCCTGCTCCATTCCGGCGACGTGGAGCGCGTGACGCTGCTTATCA 46435 | | | || ||| || | |||||||| ||| |||||| |||| | | |||| Sbjct 5058 TCGCAACCAAAGGCTGCATGAAGTACACCGGCGACCTGGTGCGCGTCACGCAGATCATCA 4999 Query 46436 ACGGCGGCCGTAACGG 46451 | || || | ||||| Sbjct 4998 ATGGTGGGCAGAACGG 4983 Score = 91.5 bits (100), Expect = 5e-14 Identities = 119/163 (73%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 45898 GCGGCAGGTATAAGCGCCGGTCTAGCCGTGCGCTGGTTTCACTATATCGATGCTGCAATG 45957 || || ||||| || | | || ||| |||||||| || ||||| || |||||| Sbjct 5533 GCCGCCGGTATCAGTGAGGTGCTGGCCACGCGCTGGTATCTGCATATCACCGCGGCAATG 5474 Query 45958 AAGGAATTCGGCAT--AACCGCGCCGCTCGATCAGGCCATGTTTATCGCGCAGATGGGCC 46015 || || || ||||| ||| | |||| | ||||| ||||||||||||||| | || | Sbjct 5473 AAAGAGTTTGGCATCGAACAAC--CGCTGCACCAGGCGATGTTTATCGCGCAGGTCGGGC 5416 Query 46016 ACGAGTCCGGCGGCTTCACCCGGCTGGTGGAAAACCTGAACTA 46058 | ||||| |||||| ||||||||| ||||||| | ||||| Sbjct 5415 ATGAGTCTACCGGCTTTACCCGGCTGCAGGAAAACTTCAACTA 5373 >seq278 Length=18759 Score = 95.1 bits (104), Expect = 4e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 12181 GCTGGAATCTCCGTTGGTCAGTACAGCGCAGCAATGCGTACGCTTCCGGCTCAGTTCACG 12240 || || || ||||| || ||||| | || || ||||||| ||| || || |||||||| Sbjct 8932 GCGGGGATTTCCGTCGGGCAGTATAAAGCCGCCATGCGTATGCTGCCTGCACAGTTCACC 8873 Query 12241 GATATCGCCACGCAGTTAGCTGGTGGGCAGTCGCCGTTCCTGATTCTGCTGCAACAGGGC 12300 || | ||||||||| | || || ||||| |||| ||||| |||||||||||||| Sbjct 8872 GACGTGGCCACGCAGCTTGCAGGCGGGCAAAGTCCGTGGCTGATCCTGCTGCAACAGGGT 8813 Query 12301 GGGCAGATTAAAGAC 12315 || ||| |||| ||| Sbjct 8812 GGTCAGGTTAAGGAC 8798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158468464253212