Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_016571.1 Length=284757 Score E Sequences producing significant alignments: (Bits) Value seq3869 576 2e-159 seq4256 100 5e-16 seq2048 100 5e-16 seq501 100 5e-16 >seq3869 Length=8584 Score = 576 bits (638), Expect = 2e-159 Identities = 799/1116 (72%), Gaps = 2/1116 (0%) Strand=Plus/Plus Query 207810 GATCAGACTCATTACAGTTGGAAATCACCGAACTCGGCAGTATCTACTTCTGAGTCGATC 207869 |||| | ||||||||| ||||| | || | ||| | | ||| ||||| || |||||| Sbjct 1853 GATCCGCTTCATTACAGCTGGAAGTTACTCAGATCGTCGGCATCGACTTCAGAATCGATC 1912 Query 207870 TGACCTACCAGGTAAGAAGAAACTTCTACTTCCTGAGGAGCAACCTGAACGTTGTCAGTT 207929 || || || || |||||| ||||| |||||||| || || |||||||||||||| | Sbjct 1913 TGGCCGACGAGATAAGAACTGACTTCCACTTCCTGCGGCGCCACCTGAACGTTGTCGGAG 1972 Query 207930 ACCAGCCATGAGTTAATCCATGGAATTGGGTTAGAGTTGGTTTTGAATGGAAGATCCAAA 207989 |||||||| | ||| |||||||| || ||||| ||| ||| | ||| || ||||| | Sbjct 1973 ACCAGCCAGGTGTTGATCCATGGGATCGGGTTGGAGCGGGTCTGGAACGGCAGATCGAGG 2032 Query 207990 CCGATCGCCTGCATACGGATGTTGGTAATGTACTCAACATACTGGCAGAGGATCTCTTTG 208049 || | ||||||||| ||||| ||||| |||||||| || ||||||||||| || ||||| Sbjct 2033 CCCACCGCCTGCATGCGGATATTGGTGATGTACTCGACGTACTGGCAGAGAATATCTTTA 2092 Query 208050 TTCAGACCGATCATTGAACCATCTTTGAACAGATAGTCAGCCCACTCTTTTTCTTGCTGA 208109 ||||| |||||||| || || || |||||| ||||| ||||||||||| || ||||| Sbjct 2093 TTCAGGCCGATCATCGAGCCGTCGCGGAACAGGTAGTCCGCCCACTCTTTCTCCTGCTGC 2152 Query 208110 G-CGGTAGCAACGAACATGTCGTATGACTCTTGACGACACTCTGCTGCAATCTCAGCCAT 208168 | || ||| ||||||| ||| || |||| || |||||| | || || || ||||| Sbjct 2153 GCCGCCAGC-ACGAACAGGTCATAGCACTCCTGCTTGCACTCTTCGGCGATTTCCGCCAT 2211 Query 208169 CTCTGGATCATCTTTACCAGAGTTCATCAGGTTGATGATGTGCTGAGTACCAACCATGTG 208228 || ||||| || | || ||| || |||||| | || ||||| || || || ||| Sbjct 2212 TTCCGGATCGTCGCTGCCGGAGCGCAGCAGGTTCAGCATATGCTGGGTGCCGGTCAGGTG 2271 Query 208229 AAGTGCTTCGTCACGTGCGATCATTTTGATGATCTTAGCGTTACCTTCCATCAGCTTACG 208288 || ||||| || || ||||||| ||| || || ||||| ||||||||||| || || Sbjct 2272 CAGCGCTTCATCGCGGGCGATCAGGCGGATAATTTTGGCGTTGCCTTCCATCAGTTTGCG 2331 Query 208289 TTCGGCAAATGCGAATGAGCAAGCGAAGGATACGTAGAAACGAATAGCTTCAAGTGAGTT 208348 ||||||||| ||||| ||||| |||||| |||||||| || || ||||| || | || Sbjct 2332 TTCGGCAAAGGCGAAGGAGCAGGCGAAGCTGACGTAGAAGCGGATCGCTTCCAGGGCATT 2391 Query 208349 GATAGATTGCAGAGCCAGGTACAGTGCTTTCTTAATAGCACGAAGATTAACATTAACCTT 208408 | ||| ||| || ||| || || | | || ||||| || | || | Sbjct 2392 AACGCTCATCAGGCACAGATAGAGTTTCTTTTTCAGCTCGCGCAGATTCACGGTCACGGT 2451 Query 208409 CTCGCCATTGACTACGTGGTCACCCAGACCCAGGTAATAGTACTGGTTGATCAAGGCAAT 208468 | ||| ||||| |||| || ||||| || | | | || ||| | || Sbjct 2452 TTTGCCGTTGACGGTGTGGGTGCCTTCGCCCAGCAGATGCCAGTAGCTGGTCATTTCGAT 2511 Query 208469 CAGTTTGTCGTAGTAATGGGAAACAGATGCAGCACGTTTCTTGATATGTTCGTTATCTAC 208528 ||| ||||| || || || | | | |||||||||| ||| || ||||| || Sbjct 2512 CAGCGAATCGTAATAGTGAGAGATGCCTTCCGCACGTTTCTGGATCTGCTCGTTGGTGAC 2571 Query 208529 AACGTCATCAAAGACAATGGAAGGATCGTTAACGATGTTCCTGATGATGTGAGTATAGCT 208588 | ||| || || || | | || ||||| |||||||| | |||||||||||| || Sbjct 2572 GATGTCGTCGAACACGGTCGCCGGGTCGTTGACGATGTTGCGGATGATGTGAGTGTACGA 2631 Query 208589 ACGACTGTGGATGGTTTCAGAGAAGCCCCAGGTCTCAGCCCATGTTTCCAGCTCTGGGAT 208648 ||| ||| ||||| || |||||| ||||||| || |||| || |||||||| ||||| Sbjct 2632 ACGCGAGTGAATGGTCTCGGAGAAGGCCCAGGTTTCTACCCAGGTCTCCAGCTCCGGGAT 2691 Query 208649 AGAGCAGATCGGGAGTAATGCAACGTTTGGACCACGGCCCTGGATAGAGTCCAGTAGTGT 208708 ||| | ||| || || || || || || | |||||||||||| ||||| || || || Sbjct 2692 GGAGATCAGCGGCAGCAACGCCACATTCGGGCTACGGCCCTGGATGGAGTCGAGCAGCGT 2751 Query 208709 CTGATATTTCAGGTTACTGATGAACAGGTGTTTCTCGTGATCTGGTAAAGCCATGTAGTC 208768 ||| || |||||||| |||||||| | ||||| || || || || | ||| |||||| Sbjct 2752 CTGGTACTTCAGGTTGCTGATGAAAATATGTTTTTCATGTTCCGGCAGCGCCTGGTAGTC 2811 Query 208769 AATACGGTCACGGGAGACATCTACTTCTTCAGGACGCCAGAAGAAAGAAAGTTGTTTCTC 208828 || || || ||||| || || || ||||| || ||||||||||| || || || || || Sbjct 2812 GATGCGATCGCGGGAAACGTCAACCTCTTCCGGGCGCCAGAAGAAGGAGAGCTGCTTTTC 2871 Query 208829 AATGAGTTTCTCAAAGATCTCATACTTCTGTTGGTCGTAACGAGAAACGTTGACGTTTTG 208888 ||| || || |||||||| || || || || || ||||| || | ||||| || || Sbjct 2872 AATCAGCTTTTCAAAGATGTCGTATTTTTGCTGATCGTAGCGGGCCACGTTAACCGGCTG 2931 Query 208889 ACCCAGGAACATGTGTTCTTGTAATTGATCGTTTTT 208924 || | ||||| |||| | | ||||||||||| Sbjct 2932 GCCAAAAAACATAGGTTCCAGCAGCTGATCGTTTTT 2967 >seq4256 Length=25676 Score = 100 bits (110), Expect = 5e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 16822 AATGTGGCGCTCGTGACAGGGCTCGAACCTGTGACATACGGATTAACAGTCCGCCGTTCT 16881 ||| |||| | |||| || |||||||| |||||||||||||||||||||||||||||| Sbjct 9995 AATTTGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCT 10054 Query 16882 ACCGACTGAACTACA 16896 ||||||||||||||| Sbjct 10055 ACCGACTGAACTACA 10069 Score = 100 bits (110), Expect = 5e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 16822 AATGTGGCGCTCGTGACAGGGCTCGAACCTGTGACATACGGATTAACAGTCCGCCGTTCT 16881 ||| |||| | |||| || |||||||| |||||||||||||||||||||||||||||| Sbjct 11911 AATTTGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCT 11852 Query 16882 ACCGACTGAACTACA 16896 ||||||||||||||| Sbjct 11851 ACCGACTGAACTACA 11837 >seq2048 Length=13079 Score = 100 bits (110), Expect = 5e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 16822 AATGTGGCGCTCGTGACAGGGCTCGAACCTGTGACATACGGATTAACAGTCCGCCGTTCT 16881 ||| |||| | |||| || |||||||| |||||||||||||||||||||||||||||| Sbjct 4009 AATTTGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCT 4068 Query 16882 ACCGACTGAACTACA 16896 ||||||||||||||| Sbjct 4069 ACCGACTGAACTACA 4083 >seq501 Length=12468 Score = 100 bits (110), Expect = 5e-16 Identities = 71/80 (89%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 16119 AATGGCGCGCCCTACAGGATTCGAACCTGTGACCAATAGCTTAGAAGGCTACTGCTCTAT 16178 |||||| ||||||||||||||||||||||||||| | ||||||||||| |||||||| Sbjct 11032 AATGGCACGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTAT 11091 Query 16179 CCA-CTGAGCTAAGAGCGCC 16197 ||| |||||||||| ||||| Sbjct 11092 CCAGCTGAGCTAAGGGCGCC 11111 Score = 96.9 bits (106), Expect = 6e-15 Identities = 69/78 (88%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 16040 TGGTGGCCCCGGCGTGACTTGAACACGCGACCAAGCGATTATGAGTCACCTGCTCTAACC 16099 |||||||||| || ||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 4856 TGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 4797 Query 16100 GTCTGAGCTACGGGGCCG 16117 |||||||| ||||||| Sbjct 4796 -ACTGAGCTAAGGGGCCG 4780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 910772931729640