Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq6347 174 5e-39 seq11225 168 2e-37 seq3523 131 5e-26 seq2460 113 1e-20 seq85 91.5 5e-14 seq1200 84.2 7e-12 >seq6347 Length=2804 Score = 174 bits (192), Expect = 5e-39 Identities = 202/271 (75%), Gaps = 6/271 (2%) Strand=Plus/Plus Query 21313 CCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACC 21372 ||| ||| | | ||||||||||||||||| || || |||||||| |||||||| || || Sbjct 127 CCCGGTGGTTGCCCTGTCGCAGCTCAACCGATCTCTTGAGCAGCGTCCGAACAAACGCCC 186 Query 21373 GATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTT 21432 ||| | || ||| |||| || ||||| |||||||||||||| || || ||||||||||| Sbjct 187 GATCAACTCCGACTTGCGGGAATCCGGAGCGATCGAGCAGGATGCTGACGTGATCATGTT 246 Query 21433 CGTGTACCGCGACGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGGCTGAGTTGAT 21492 ||| ||||| |||||||| || |||||||| ||| || | ||| | ||||| | || Sbjct 247 CGTATACCGGGACGAGGTGTATCACCCGGAGACCGAGCATAAAGGCATCGCTGAAATCAT 306 Query 21493 CATCGCGAAGCACCGCAACGGCGAGCCAA---GCACTGTTCGGTGCGCGTTCCTGGGTAA 21549 |||| || || || ||||| ||||| |||| || || ||| | ||||| Sbjct 307 TATCGGTAAACAGCGTAACGG---GCCAATCGGCACCACGCGCCTGGCCTTCATCGGTAA 363 Query 21550 GTACTCGCGATTCGAGCAGCTCGCTCCGGGC 21580 ||| | || |||||| | || || |||||| Sbjct 364 ATACACCCGCTTCGAGAACCTGGCGCCGGGC 394 >seq11225 Length=5908 Score = 168 bits (186), Expect = 2e-37 Identities = 195/260 (75%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 21313 CCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTG-GAGCAGCGGCCGAACAAGCGAC 21371 |||||| |||| ||| |||||| | |||| | || ||||||||||| |||||||| | Sbjct 1534 CCCCGTCATCGCGCTATCGCAGTTGTCCCGC-CAGTGTGAGCAGCGGCCCAACAAGCGCC 1592 Query 21372 CGATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGT 21431 | ||| | ||| |||| |||||||| ||||||||||||||||| || | ||||||| Sbjct 1593 CTGTGAACGCAGACTTGCGGGAGTCCGGCGCGATCGAGCAGGACGCGGACATCATCATGT 1652 Query 21432 TCGTGTACCGCGACGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGGCTGAGTTGA 21491 |||| || || |||||||||||| ||||||| || ||||| || || || ||||||| Sbjct 1653 TCGTCTATCGAGACGAGGTCTACAACCCGGACACTGAGTACAAGGGGGTTGCCGAGTTGA 1712 Query 21492 TCATCGCGAAGCACCGCAACGGCGAGCCAAGCACTGTTCGGTGCGCGTTCCTGGGTAAGT 21551 || ||| |||||||| ||||| || | | || || ||| |||||| | || ||| Sbjct 1713 TCCTCGGCAAGCACCGGAACGGTGAAACCGGTACCGTGCGGACCGCGTTTATTGGCAAGG 1772 Query 21552 ACTCGCGATTCGAGCAGCTC 21571 | | || || | || |||| Sbjct 1773 AAACTCGTTTTGTGCCGCTC 1792 >seq3523 Length=12220 Score = 131 bits (144), Expect = 5e-26 Identities = 145/191 (76%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 21268 CGACATGTCCCGCCAGTGCAAGCTGCTGGCGATGGAGCTTGGTATCCCCGTGATCGTGCT 21327 ||| || |||||| | ||| |||||||| ||||| | || ||| | | ||| Sbjct 5597 CGAAATCTCCCGCTCGCTGAAGGCGCTGGCGAAAGAGCTGCAGGTGCCGGTGGTGGCGCT 5538 Query 21328 GTCGCAGCTCAACCGCTCCCTGGAGCAGCG-GCCGAACAAGCGACCGATGATGTCGGACC 21386 ||||||||| |||||||| ||||||||||| |||| | ||||| ||| | | || |||| Sbjct 5537 GTCGCAGCTTAACCGCTCGCTGGAGCAGCGCGCCG-ATAAGCGCCCGGTCAACTCCGACC 5479 Query 21387 TGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTTCGTGTACCGCGACG 21446 |||| |||||||| | ||||| ||||| ||||| | ||||||||| | ||||| || | Sbjct 5478 TGCGTGAGTCCGGCTCTATCGAACAGGATGCCGACTTAATCATGTTCATTTACCGTGATG 5419 Query 21447 AGGTCTACCAC 21457 ||||||| ||| Sbjct 5418 AGGTCTATCAC 5408 >seq2460 Length=7260 Score = 113 bits (124), Expect = 1e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 21313 CCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACC 21372 ||| ||| | | ||| || ||||||||||| ||||||| ||||| || ||||| || Sbjct 4266 CCCGGTGGTTGCGCTTTCCCAGCTCAACCGAGAACTGGAGCGACGGCCAAATAAGCGTCC 4207 Query 21373 GATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTT 21432 ||| | | |||||||| || ||| ||||| || |||||||| || |||| ||||| Sbjct 4206 GATCAACGCAGACCTGCGTGATAGCGGTGCGATTGAACAGGACGCGGACCTGATTATGTT 4147 Query 21433 CGTGTACCGCGACGAGGTCTACCACCC 21459 ||| ||||| |||||||| |||||||| Sbjct 4146 CGTCTACCGGGACGAGGTGTACCACCC 4120 >seq85 Length=367292 Score = 91.5 bits (100), Expect = 5e-14 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 21320 ATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGA-ACAAGCGACCGATGAT 21378 |||| |||||| |||||| ||| |||| ||| || | ||||||| ||| | | Sbjct 201089 ATCGCGCTGTCACAGCTCTCCCGTCAGGTGGAA-AGCCGCGAAGACAAGCGCCCGCAGCT 201147 Query 21379 GTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTTCGTGTA 21438 || |||||||| || |||||| ||||||||||||||||||| ||| | || ||||| || Sbjct 201148 CTCCGACCTGCGTGAATCCGGGTCGATCGAGCAGGACGCCGACGTGGTGATCTTCGTTTA 201207 Query 21439 CCGCGACGA 21447 |||||||| Sbjct 201208 TCGCGACGA 201216 >seq1200 Length=6265 Score = 84.2 bits (92), Expect = 7e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 47536 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 47594 || ||||||||||||||||||||||||| || ||||||||||||||| | ||||||||| Sbjct 5281 ACTGGATTTAGGTTCCAGCGCCGCAAGGTGTAAGAGTTCGAGTCTCTTCATCCGCACCA 5339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157057737281278