Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq360 217 5e-52 seq76 147 7e-31 seq12700 145 2e-30 seq11225 145 2e-30 seq97 132 2e-26 seq4750 118 3e-22 >seq360 Length=29890 Score = 217 bits (240), Expect = 5e-52 Identities = 298/410 (73%), Gaps = 10/410 (2%) Strand=Plus/Plus Query 25866 CTGAGGCTGTTGAGGTTGGCCCCAACCGG--TGTTACTTGCGCTACGATTACCGCCGCCG 25923 ||| ||||| || || || ||||||||| || | || || | || | ||| || | Sbjct 27167 CTGCGGCTGCTGCGGCTGACCCCAACCGCCCTGCTGCTGGC-CGCCGCCTGCCGGTGC-G 27224 Query 25924 CTGCCGCCTTCTGGAGCCTTGCCGATCATCTGCATGGTTCCGCCAACGTTGACCACAATT 25983 | |||||| | | ||| ||| | |||||||||||| ||||| ||||| ||||| | | Sbjct 27225 CCGCCGCCCTGACG-GCC--GCCCAGCATCTGCATGGTGCCGCCCACGTTCACCACCACT 27281 Query 25984 TCAGTGGTGTAGCGCTCAACGCCGTCCTTTTC---CCACTTGCGGGTTTTCAGTTGCCCC 26040 || |||||||| || ||| | || |||||||||||| ||| || || Sbjct 27282 TCGGTGGTGTATTTGTCCTGACCGGATTGATCGGTCCACTTGCGGGTACGCAGCTGGCCT 27341 Query 26041 TCAATGTAAACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGCTACCTTGCCA 26100 |||||||| ||||| || ||||| ||| ||||| || |||| ||||| | ||||| Sbjct 27342 TCAATGTACACCTGAGAGCCTTTACGCAGATACTCACCAGCGACTTCCGCCAGTTTGCCG 27401 Query 26101 AACAGCACGACGCGATGCCATTCTGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTC 26160 |||||||| ||||| ||||| || ||| |||||| |||||||||||||||| || | Sbjct 27402 AACAGCACAACGCGGTGCCACTCGGTCTGCTCTTTCATTTCGCCGGTCTGCTTGTCACGC 27461 Query 26161 CAGCTTTCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCATTAGGCATGTAACGG 26220 ||| ||| || || || | || | ||||||||| ||||||||| | |||||||| || Sbjct 27462 CAGGATTCGGAAGTTGCCAGCGTGAAGTTGGCGACAGCGCCGCCACTTGGCATGTAGCGT 27521 Query 26221 ATCTCTGGATCGTTCCCCAGGTTACCGACAAGGATTACTTTATTTACGCC 26270 | || || || | |||||| |||||||| || || || || |||||||| Sbjct 27522 ACTTCCGGGTCCTGCCCCAGATTACCGACGAGAATCACCTTGTTTACGCC 27571 >seq76 Length=48202 Score = 147 bits (162), Expect = 7e-31 Identities = 228/326 (70%), Gaps = 0/326 (0%) Strand=Plus/Minus Query 25950 CATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTC 26009 |||||||||||| || || || | |||||||||| ||| || | |||| Sbjct 1656 CATCTGCATGGTGCCCGTGGTCTTAACAAGAATTTCAGTGACGTAACGGGTGATACCGTT 1597 Query 26010 CTTTTCCCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAG 26069 | |||||| | ||||| ||||||||||| ||||| ||||| | || || ||| Sbjct 1596 ATCTTCCCAGCTACGGGTACGGAGTTGCCCCTCGATGTAGACCTGCGCGCCCTTGCGCAG 1537 Query 26070 GTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTCTGTCAC 26129 || || || || | ||||| | |||||| |||||||| ||||| |||||||| ||| Sbjct 1536 ATATTCACCAGCCACTTCCGCGAGCTTGCCGAACAGCACCACGCGGTGCCATTCCGTCTG 1477 Query 26130 TTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTT 26189 || | | || || ||||| || || |||||||||||| || || || | ||| Sbjct 1476 CTCCCGCATCTCCCCCGTCTGTTTGTCACGCCAGCTTTCTGATGTGGCCACCTGCAGGTT 1417 Query 26190 GGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGTTCCCCAGGTTACCGAC 26249 || |||||||| || || || |||||||||| || ||||| || ||||| ||||| Sbjct 1416 TGCCACTGCGCCCCCGTTGGGGATGTAACGGACTTCCGGATCATTGCCCAGACGCCCGAC 1357 Query 26250 AAGGATTACTTTATTTACGCCGCGTG 26275 ||||| || || || | || |||| Sbjct 1356 GAGGATGACCTTGTTGATACCACGTG 1331 >seq12700 Length=2524 Score = 145 bits (160), Expect = 2e-30 Identities = 226/321 (70%), Gaps = 6/321 (2%) Strand=Plus/Minus Query 25954 TGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTCCTTT 26013 |||||||| || | || |||||| |||||||||||||| |||| | |||||| ||| Sbjct 471 TGCATGGTGCCTTGCATGTCGACCACGATTTCAGTGGTGTAACGCTTGATGCCGTCTTTT 412 Query 26014 TCCCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTAC 26073 ||||||| |||| || | || || ||||| ||||| |||||||| |||||| Sbjct 411 TCCCACTCGCGG----NNAGCTTGCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTAT 356 Query 26074 TCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTCTGTCACTTCT 26133 || || |||||||| || |||||||| |||| | || || |||||||| || || Sbjct 355 TCACCGGCGATCTCTGCAACCTTGCCGAACATCGACACACGGTGCCATTCGGTTTTCTCG 296 Query 26134 TTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTTGGCG 26193 ||| | |||||| ||||| ||| |||| ||| |||||| | | | ||||| Sbjct 295 ACCTTCTGGCCGGTTTGCTTGTCGGTCCACTGTTCGCTGGTCGCCAGACTCAGGTTGGTC 236 Query 26194 ACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGT-TCCCCAGGTTACCGACAAG 26252 || ||| || || |||| ||| || | || ||||| | || || | ||||||| | Sbjct 235 ACGGCGTTACCGTTCGGCAAGTAGCGAACTTCGGGATCCTGGCCGCATG-TACCGACCAA 177 Query 26253 GATTACTTTATTTACGCCGCG 26273 || ||||| || || || || Sbjct 176 TATGACTTTGTTAACCCCACG 156 >seq11225 Length=5908 Score = 145 bits (160), Expect = 2e-30 Identities = 215/305 (70%), Gaps = 0/305 (0%) Strand=Plus/Plus Query 25971 GTTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTCCTTTTCCCACTTGCGGGTTTT 26030 || ||| || || || ||||||||||| | || ||||| |||||||||| |||||| Sbjct 5013 GTCGACGACGATCTCGGTGGTGTAGCGTTTCACTCCGTCTTTTTCCCACTCGCGGGTGCG 5072 Query 26031 CAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGC 26090 || || || | ||| ||| ||||| ||| ||||| |||||||| || || Sbjct 5073 GAGAGTGCCTTCGACGTAGCACTGGCTCCCTTTTCGCAGATACTCACCCGCGATTTCGGC 5132 Query 26091 TACCTTGCCAAACAGCACGACGCGATGCCATTCTGTCACTTCTTTCTTTTCGCCGGTCTG 26150 | |||||| || | ||| ||||| ||||| || || || | || | ||||||||| Sbjct 5133 GATCTTGCCGAAGAACACTACGCGGTGCCACTCGGTACGCTCCTGCTGCTGGCCGGTCTG 5192 Query 26151 CTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCATTAGG 26210 |||||| ||||||||||| ||| || | ||| ||||| | || ||| ||| || || Sbjct 5193 CTTATCTTTCCAGCTTTCGCTGGTGGCCAGGGTTATGTTCGTTACGGCGTTGCCGTTCGG 5252 Query 26211 CATGTAACGGATCTCTGGATCGTTCCCCAGGTTACCGACAAGGATTACTTTATTTACGCC 26270 |||| |||| || || ||| || ||| ||||| || || ||||| || ||||| Sbjct 5253 GGTGTAGCGGACTTCCGGGTCGCCGCCGGCGTTGCCGACGAGAATCACTTTGTTGACGCC 5312 Query 26271 GCGTG 26275 |||| Sbjct 5313 TCGTG 5317 >seq97 Length=44549 Score = 132 bits (146), Expect = 2e-26 Identities = 231/336 (69%), Gaps = 0/336 (0%) Strand=Plus/Minus Query 25950 CATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTC 26009 |||||||||||| || || || | |||||| ||| ||| || | |||| Sbjct 5036 CATCTGCATGGTGCCTGTGGTCTTAACAAGAATTTCGGTGACGTAACGGGTGATACCGTT 4977 Query 26010 CTTTTCCCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAG 26069 | |||||| | ||||| || || || || ||||| ||||| | || || ||| Sbjct 4976 ATCTTCCCAGCTACGGGTGCGAAGCTGACCTTCGATGTAGACCTGCGCGCCCTTGCGCAG 4917 Query 26070 GTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTCTGTCAC 26129 || ||||| || | ||||| | |||||| |||||||| |||||||||||||||||| Sbjct 4916 ATATTCGCCAGCCACTTCCGCGAGCTTGCCGAACAGCACCACGCGATGCCATTCTGTCTG 4857 Query 26130 TTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTT 26189 || | | || || ||||| || || |||| |||| || || || || | ||| Sbjct 4856 CTCCCGCATCTCCCCTGTCTGTTTGTCACGCCAGGTTTCCGACGTGGCGACCTGCAGGTT 4797 Query 26190 GGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGTTCCCCAGGTTACCGAC 26249 || |||||||| || || || |||||||||| || ||||| || |||||| || || Sbjct 4796 TGCCACTGCGCCCCCGTTGGGGATGTAACGGACTTCCGGATCTTTTCCCAGGCGTCCTAC 4737 Query 26250 AAGGATTACTTTATTTACGCCGCGTGATGCCATTAT 26285 || || || || || | ||| || |||||| || Sbjct 4736 GAGAATGACCTTGTTAATGCCACGAACTGCCATGAT 4701 >seq4750 Length=4641 Score = 118 bits (130), Expect = 3e-22 Identities = 215/309 (70%), Gaps = 12/309 (4%) Strand=Plus/Minus Query 25971 GTTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTCCTTTTCCCACTTGCGGGTTTT 26030 || ||| | |||||| |||||||| || | | ||||| |||||||||| || |||| Sbjct 4285 GTCGACGATAATTTCGGTGGTGTACCGTTTGATACCGTCTTTTTCCCACTCTCGTGTTTG 4226 Query 26031 CAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGC 26090 || | || || ||||| ||||| || |||||| ||| ||||| || ||||| || || Sbjct 4225 AAGCTTACCTTCGATGTATACCTGCGATCCTTTCCGCAGATACTCACCAGCGATTTCAGC 4166 Query 26091 TACCTTGCCAAACAGCACGACGCGATGCCATTCTGTCACTTC---TTTCTTTTCGCCGGT 26147 || || ||||||| || || |||||||| ||| ||| ||||| | || || Sbjct 4165 GACTTTCCCAAACAAAGAAACACGGTGCCATTCGGTCTTTTCGACTTTCTGT---CCCGT 4109 Query 26148 CTGCTTATCGTTCCA--GCTTTCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCA 26205 ||||| || |||| ||| || || || | | | | |||| ||||| || Sbjct 4108 TTGCTTGTCAGTCCACTGCTCACTT--GTTGCAAGGCTGAGATTGGTTACTGCATTACCG 4051 Query 26206 TTAGGCATGTAACGGATCTCTGGATCGTTCCC-CAGGTTACCGACAAGGATTACTTTATT 26264 || || | ||| || | |||||||| | || ||||| || || | ||| |||||||| Sbjct 4050 TTCGGTAAGTAGCGAGTTTCTGGATCTTGACCACAGGTG-CCAACCAAGATCACTTTATT 3992 Query 26265 TACGCCGCG 26273 ||||||||| Sbjct 3991 TACGCCGCG 3983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159764029839682