Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_017985.1 Length=40128 Score E Sequences producing significant alignments: (Bits) Value seq1687 978 0.0 seq40 100 7e-17 seq501 96.9 9e-16 seq62 86.0 2e-12 >seq1687 Length=800 Score = 978 bits (1084), Expect = 0.0 Identities = 638/702 (91%), Gaps = 0/702 (0%) Strand=Plus/Plus Query 20813 GTGGCGGGGCTATTGCCATAGCATCTGTGTTAATCACTGGCCCCGGTGGTAACGATGGTC 20872 ||||||| || ||||| |||||||| ||||||||||||||||| ||||||||||||||| Sbjct 18 GTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTGGCCCAAGTGGTAACGATGGTC 77 Query 20873 TGGAAGGTGTCAGATACAAACCATACAAGGACGTAGTTGGTGTGTTGACTGTGTGTTATG 20932 ||||||||||||| |||| ||||||||| || | |||||||| | |||||| ||| | | Sbjct 78 TGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTATGGACTGTATGTCACG 137 Query 20933 GCCACGTCGGAAAAGACATCATGCTCGGTAAAACGTATACCGAAGCAGAATGCGAAGCCC 20992 | || ||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 138 GGCATACAGGAAAAGACATCATGCTCGGTAAAACGTATACCAAAGCAGAATGCAAAGCCC 197 Query 20993 TCCTGAATAAAGACCTTGCCACGGTCGCCAGACAAATTAACCCGTACATCAAAGTCGATA 21052 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 198 TCCTGAATAAAGACCTTGCCACGGTCGCCAGACAAATTAACCCGTACATAAAAGTTGATA 257 Query 21053 TACCGGAAACAACGCGCGGCGCTCTTTATTCGTTCGTCTATAACGTGGGCGCAGGCAATT 21112 |||||||||||||||||||||||||||| |||||||| || ||||||||||| ||||||| Sbjct 258 TACCGGAAACAACGCGCGGCGCTCTTTACTCGTTCGTTTACAACGTGGGCGCTGGCAATT 317 Query 21113 TCAGAACATCGACGCTTCTTCGCAAAATCAACCAGGGCGATATCAAGGGCGCATGTGACC 21172 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | Sbjct 318 TCAGAACATCGACGCTTCTTCGCAAAATAAACCAGGGCGATATCAAAGGCGCATGTGATC 377 Query 21173 AGCTACGTCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGGCTGATGACTCGCCGTG 21232 ||||||||||||||||||| ||||||||||||||||||||||| || |||||||| |||| Sbjct 378 AGCTACGTCGCTGGACATATGCTGGCGGTAAGCAATGGAAAGGTCTCATGACTCGTCGTG 437 Query 21233 AGATTGAGCGTGAAGTCTGTTTGTGGGGGCAGCAATGAGCAGAGTAACCGCGATTATCTC 21292 |||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct 438 AGATTGAGCGTGAAATCTGTTTGTGGGGTCAGCAATGAACAGAGTAACCGCGATTATCTC 497 Query 21293 CGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAA 21352 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 498 CGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAA 557 Query 21353 TGCAATCGCCTACAAAGAGCAGCGCGATAAAAAAGTCAGTGAACTGAAGCAGGCGACCGC 21412 || || ||||||||| |||||||| ||||| | ||| |||||||||| ||||| ||| Sbjct 558 CGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGC 617 Query 21413 CACCATTACTGACATGCAGCAGCGCCAGCGTGATGCTGATGCACTCGATGCTAAATACAC 21472 | ||||||||||||||| |||||||||||||| || |||||| |||| |||||||| Sbjct 618 GGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCACTGGATGAAAAATACAC 677 Query 21473 GAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATGCTCTTCG 21514 ||||||||||||| ||||||||||||||||||||||||| || Sbjct 678 GAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATGCTCTGCG 719 >seq40 Length=14228 Score = 100 bits (110), Expect = 7e-17 Identities = 69/78 (88%), Gaps = 4/78 (5%) Strand=Plus/Plus Query 4835 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGTACGAG 4894 ||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| Sbjct 3048 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 3107 Query 4895 GATG----TTATTGCTGC 4908 |||| | |||||||| Sbjct 3108 GATGCTGTTCATTGCTGC 3125 >seq501 Length=12468 Score = 96.9 bits (106), Expect = 9e-16 Identities = 98/128 (77%), Gaps = 11/128 (9%) Strand=Plus/Minus Query 3106 CTTATTTTTACT-GTGGGACATATTTGGGACAG----------AAGTACCAAAAATCGAG 3154 || |||||| || ||||||||||||||||||| || | ||||||| ||| Sbjct 10997 CTGATTTTTCCTTGTGGGACATATTTGGGACATCTTCTGCAAAAATTTGCAAAAATTGAG 10938 Query 3155 TCAATTTGTCGAGCATGTTCAGTCAGGTGATTTGGTGCCAGATGAGCATATCGGCGAACC 3214 |||||||| || || || ||||| | || || |||||||| ||||||||||| || ||| Sbjct 10937 TCAATTTGACGTGCGTGCTCAGTTAAATGGTTAGGTGCCAGGTGAGCATATCGACGGACC 10878 Query 3215 ATTTCGAT 3222 |||||||| Sbjct 10877 ATTTCGAT 10870 >seq62 Length=1393 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 3025 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 3076 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 25 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 76 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128244998423660