Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_018269.1 Length=31766 Score E Sequences producing significant alignments: (Bits) Value seq6347 120 6e-23 seq3523 102 2e-17 seq2460 87.8 4e-13 >seq6347 Length=2804 Score = 120 bits (132), Expect = 6e-23 Identities = 207/301 (69%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 25059 AAATCCATGGCGAAAGAATTTAATTGTCCAATGATCGCGTTATCACAGCTTAACCGAGGT 25118 ||| || |||| || ||||| || || || || | || | || ||||| |||||| | Sbjct 101 AAAGCCCTGGCCAAGGAATTCAACTGCCCGGTGGTTGCCCTGTCGCAGCTCAACCGATCT 160 Query 25119 CTTGAAAACAGACAGGATAAGCGCCCAATTAACTCAGACTTGCGCGAGTCTGGCGCGATA 25178 ||||| | | | | | || ||||| || ||||| |||||||| || || || ||||| Sbjct 161 CTTGAGCAGCGTCCGAACAAACGCCCGATCAACTCCGACTTGCGGGAATCCGGAGCGATC 220 Query 25179 GAACAGGATGCTGATCTAATCGCATTGATATACCGAGACGAAGTGTATAACCCCGACAGC 25238 || ||||||||||| | ||| || ||||||| ||||| |||||| |||| || | | Sbjct 221 GAGCAGGATGCTGACGTGATCATGTTCGTATACCGGGACGAGGTGTATCACCCGGAGACC 280 Query 25239 TCTGACAAAGGCATTGCCGAGATTATCATTGGCAAACACAGGAATGGCGAGCTAGGCACA 25298 | |||||||| || || || || || || ||||| | || || | ||||| Sbjct 281 GAGCATAAAGGCATCGCTGAAATCATTATCGGTAAACAGCGTAACGGGCCAATCGGCACC 340 Query 25299 GTGAGAGCGGCATTCATTGGGCAGTACACGCGATTTGAAAACCTATCACCAGAGAGCTAT 25358 | | ||| ||||| || | ||||| || || || ||||| | || | |||||| Sbjct 341 ACGCGCCTGGCCTTCATCGGTAAATACACCCGCTTCGAGAACCTGGCGCCGGGCAGCTAT 400 Query 25359 A 25359 | Sbjct 401 A 401 >seq3523 Length=12220 Score = 102 bits (112), Expect = 2e-17 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 25134 GATAAGCGCCCAATTAACTCAGACTTGCGCGAGTCTGGCGCGATAGAACAGGATGCTGAT 25193 ||||||||||| | ||||| ||| |||| ||||| ||| | || ||||||||||| || Sbjct 5503 GATAAGCGCCCGGTCAACTCCGACCTGCGTGAGTCCGGCTCTATCGAACAGGATGCCGAC 5444 Query 25194 CTAATCGCATTGATATACCGAGACGAAGTGTATAACCCCGACAGCTCTGACAAAGGCATT 25253 ||||| || || ||||| || || || ||| || ||||| | |||||||| Sbjct 5443 TTAATCATGTTCATTTACCGTGATGAGGTCTATCACGAGAACAGCGATCTTAAAGGCATC 5384 Query 25254 GCCGAGATTATCATTGGCAAACACAGGAATGGCGAGCTAGGCACAGTGAGA 25304 || || ||||||||||| ||||| | || ||| | | ||||| ||| || Sbjct 5383 GCGGAAATTATCATTGGTAAACAACGTAACGGCCCGATCGGCACCGTGCGA 5333 >seq2460 Length=7260 Score = 87.8 bits (96), Expect = 4e-13 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 25068 GCGAAAGAATTTAATTGTCCAATGATCGCGTTATCACAGCTTAACCGAGGTCTTGAAA-A 25126 |||||||| | ||||| || || | ||| | || ||||| ||||||| || || | Sbjct 4283 GCGAAAGAGATGAATTGCCCGGTGGTTGCGCTTTCCCAGCTCAACCGAGAACTGGAGCGA 4224 Query 25127 CAGACAGGATAAGCGCCCAATTAACTCAGACTTGCGCGAGTCTGGCGCGATAGAACAGGA 25186 | | || ||||||| || || ||| ||||| |||| || || ||||| |||||||| Sbjct 4223 CGGCCAA-ATAAGCGTCCGATCAACGCAGACCTGCGTGATAGCGGTGCGATTGAACAGGA 4165 Query 25187 TGCTGATCTAATCGCATTGATATACCGAGACGAAGTGTATAACCCCGACAGCTCTGACAA 25246 || || || || || | ||||| ||||| ||||| |||| | ||| |||| Sbjct 4164 CGCGGACCTGATTATGTTCGTCTACCGGGACGAGGTGTACCACCCTCAGAGCGAACACAA 4105 Query 25247 AGGCATTGCCGAGATTATCATTGGCAA 25273 ||||||||| || || || | ||||| Sbjct 4104 AGGCATTGCAGAAATCATTCTCGGCAA 4078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 101495567722272